NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
519339 |
2l10   |
17070 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2l10
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 158
_NOE_completeness_stats.Total_atom_count 2308
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 817
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 57.6
_NOE_completeness_stats.Constraint_unexpanded_count 3236
_NOE_completeness_stats.Constraint_count 3576
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2290
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 1278
_NOE_completeness_stats.Constraint_surplus_count 217
_NOE_completeness_stats.Constraint_observed_count 2081
_NOE_completeness_stats.Constraint_expected_count 2123
_NOE_completeness_stats.Constraint_matched_count 1223
_NOE_completeness_stats.Constraint_unmatched_count 858
_NOE_completeness_stats.Constraint_exp_nonobs_count 900
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 765 746 546 73.2 0.9 .
medium-range 762 572 337 58.9 0.0 .
long-range 554 805 340 42.2 -0.9 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 24 17 0 7 8 2 0 0 0 0 . 0 70.8 70.8
shell 2.00 2.50 149 112 1 20 46 28 11 3 0 0 . 3 75.2 74.6
shell 2.50 3.00 478 358 1 12 79 165 54 26 12 4 . 5 74.9 74.8
shell 3.00 3.50 511 292 1 1 21 43 80 80 39 10 . 17 57.1 67.0
shell 3.50 4.00 961 444 0 0 4 14 83 123 95 58 . 67 46.2 57.6
shell 4.00 4.50 1384 399 0 0 0 2 18 39 63 78 . 199 28.8 46.3
shell 4.50 5.00 2000 241 0 0 0 2 2 17 25 35 . 160 12.1 33.8
shell 5.00 5.50 2539 147 0 0 0 0 3 11 17 13 . 103 5.8 25.0
shell 5.50 6.00 2856 40 0 0 0 0 2 2 3 6 . 27 1.4 18.8
shell 6.00 6.50 3165 14 0 0 0 0 0 1 1 0 . 12 0.4 14.7
shell 6.50 7.00 3502 7 0 0 0 0 1 1 1 0 . 4 0.2 11.8
shell 7.00 7.50 3614 2 0 0 0 0 0 0 1 1 . 0 0.1 9.8
shell 7.50 8.00 4300 5 0 0 0 0 0 0 1 0 . 4 0.1 8.2
shell 8.00 8.50 4542 1 0 0 0 0 0 0 0 0 . 1 0.0 6.9
shell 8.50 9.00 4766 0 0 0 0 0 0 0 0 0 . 0 0.0 6.0
sums . . 34791 2079 3 40 158 256 254 303 258 205 . 602 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 2 0 0.0 -3.4 >sigma
1 2 ILE 6 1 7 1 14.3 -2.6 >sigma
1 3 ASP 4 5 9 5 55.6 -0.3 .
1 4 PRO 5 8 7 6 85.7 1.4 >sigma
1 5 PHE 7 10 12 8 66.7 0.3 .
1 6 THR 4 10 19 7 36.8 -1.3 >sigma
1 7 GLN 7 6 17 5 29.4 -1.7 >sigma
1 8 ARG 7 10 20 9 45.0 -0.9 .
1 9 ASP 4 16 27 14 51.9 -0.5 .
1 10 VAL 5 37 47 25 53.2 -0.4 .
1 11 ASP 4 19 22 14 63.6 0.2 .
1 12 ASN 6 21 18 15 83.3 1.2 >sigma
1 13 ALA 3 30 34 18 52.9 -0.4 .
1 14 LEU 7 48 48 23 47.9 -0.7 .
1 15 ARG 7 19 18 11 61.1 0.0 .
1 16 ALA 3 25 22 10 45.5 -0.9 .
1 17 VAL 5 46 50 26 52.0 -0.5 .
1 18 GLY 3 14 14 8 57.1 -0.2 .
1 19 ASP 4 25 17 13 76.5 0.9 .
1 20 ALA 3 29 30 18 60.0 -0.0 .
1 21 SER 4 18 20 11 55.0 -0.3 .
1 22 LYS 7 15 12 8 66.7 0.3 .
1 23 ARG 7 16 17 7 41.2 -1.1 >sigma
1 24 LEU 7 41 52 23 44.2 -0.9 .
1 25 LEU 7 25 27 12 44.4 -0.9 .
1 26 SER 4 14 8 8 100.0 2.2 >sigma
1 27 ASP 4 8 8 8 100.0 2.2 >sigma
1 28 LEU 7 9 7 5 71.4 0.6 .
1 29 LEU 7 10 16 7 43.8 -0.9 .
1 30 PRO 5 11 10 8 80.0 1.1 >sigma
1 31 PRO 5 7 6 5 83.3 1.2 >sigma
1 32 SER 4 7 5 5 100.0 2.2 >sigma
1 33 THR 4 7 7 6 85.7 1.4 >sigma
1 34 GLY 3 7 8 6 75.0 0.8 .
1 35 THR 4 12 11 7 63.6 0.2 .
1 36 PHE 7 14 16 8 50.0 -0.6 .
1 37 GLN 7 13 14 11 78.6 1.0 .
1 38 GLU 5 16 17 12 70.6 0.5 .
1 39 ALA 3 36 29 23 79.3 1.0 >sigma
1 40 GLN 7 27 25 19 76.0 0.8 .
1 41 SER 4 18 14 11 78.6 1.0 .
1 42 ARG 7 31 28 19 67.9 0.4 .
1 43 LEU 7 49 52 31 59.6 -0.1 .
1 44 ASN 6 40 21 19 90.5 1.6 >sigma
1 45 GLU 5 20 14 11 78.6 1.0 .
1 46 ALA 3 31 25 17 68.0 0.4 .
1 47 ALA 3 45 36 26 72.2 0.6 .
1 48 ALA 3 33 15 14 93.3 1.8 >sigma
1 49 GLY 3 23 13 12 92.3 1.7 >sigma
1 50 LEU 7 70 69 42 60.9 -0.0 .
1 51 ASN 6 49 30 23 76.7 0.9 .
1 52 GLN 7 31 19 15 78.9 1.0 >sigma
1 53 ALA 3 37 33 22 66.7 0.3 .
1 54 ALA 3 26 38 16 42.1 -1.0 >sigma
1 55 THR 4 31 24 17 70.8 0.6 .
1 56 GLU 5 26 27 15 55.6 -0.3 .
1 57 LEU 7 51 62 27 43.5 -1.0 .
1 58 VAL 5 51 38 25 65.8 0.3 .
1 59 GLN 7 20 20 14 70.0 0.5 .
1 60 ALA 3 35 31 18 58.1 -0.2 .
1 61 SER 4 27 34 20 58.8 -0.1 .
1 62 ARG 7 18 17 10 58.8 -0.1 .
1 63 GLY 3 15 11 10 90.9 1.7 >sigma
1 64 THR 4 19 18 15 83.3 1.2 >sigma
1 65 PRO 5 17 28 13 46.4 -0.8 .
1 66 GLN 7 15 17 10 58.8 -0.1 .
1 67 ASP 4 24 22 16 72.7 0.7 .
1 68 LEU 7 35 51 20 39.2 -1.2 >sigma
1 69 ALA 3 32 23 18 78.3 1.0 .
1 70 ARG 7 20 13 9 69.2 0.5 .
1 71 ALA 3 29 27 16 59.3 -0.1 .
1 72 SER 4 33 29 18 62.1 0.1 .
1 73 GLY 3 15 12 7 58.3 -0.1 .
1 74 ARG 7 19 23 11 47.8 -0.7 .
1 75 PHE 7 68 75 47 62.7 0.1 .
1 76 GLY 3 37 27 21 77.8 0.9 .
1 77 GLN 7 16 16 11 68.8 0.4 .
1 78 ASP 4 31 23 17 73.9 0.7 .
1 79 PHE 7 71 67 46 68.7 0.4 .
1 80 SER 4 20 20 13 65.0 0.2 .
1 81 THR 4 19 19 12 63.2 0.1 .
1 82 PHE 7 72 75 47 62.7 0.1 .
1 83 LEU 7 52 62 28 45.2 -0.9 .
1 84 GLU 5 33 27 21 77.8 0.9 .
1 85 ALA 3 47 28 25 89.3 1.6 >sigma
1 86 GLY 3 30 25 18 72.0 0.6 .
1 87 VAL 5 41 39 19 48.7 -0.7 .
1 88 GLU 5 27 23 18 78.3 1.0 .
1 89 MET 6 38 40 23 57.5 -0.2 .
1 90 ALA 3 29 32 15 46.9 -0.8 .
1 91 GLY 3 17 16 9 56.3 -0.3 .
1 92 GLN 7 24 21 13 61.9 0.1 .
1 93 ALA 3 21 22 14 63.6 0.2 .
1 94 PRO 5 10 8 8 100.0 2.2 >sigma
1 95 SER 4 13 16 10 62.5 0.1 .
1 96 GLN 7 5 13 5 38.5 -1.2 >sigma
1 97 GLU 5 12 15 12 80.0 1.1 >sigma
1 98 ASP 4 22 21 16 76.2 0.8 .
1 99 ARG 7 24 37 18 48.6 -0.7 .
1 100 ALA 3 25 18 15 83.3 1.2 >sigma
1 101 GLN 7 26 17 10 58.8 -0.1 .
1 102 VAL 5 45 43 20 46.5 -0.8 .
1 103 VAL 5 41 36 25 69.4 0.5 .
1 104 SER 4 28 16 10 62.5 0.1 .
1 105 ASN 6 47 32 22 68.8 0.4 .
1 106 LEU 7 58 61 32 52.5 -0.5 .
1 107 LYS 7 36 29 12 41.4 -1.1 >sigma
1 108 GLY 3 24 13 10 76.9 0.9 .
1 109 ILE 6 50 69 27 39.1 -1.2 >sigma
1 110 SER 4 23 29 14 48.3 -0.7 .
1 111 MET 6 20 27 10 37.0 -1.3 >sigma
1 112 SER 4 17 27 12 44.4 -0.9 .
1 113 SER 4 37 41 23 56.1 -0.3 .
1 114 SER 4 23 23 12 52.2 -0.5 .
1 115 LYS 7 26 29 11 37.9 -1.3 >sigma
1 116 LEU 7 54 70 29 41.4 -1.1 >sigma
1 117 LEU 7 50 64 25 39.1 -1.2 >sigma
1 118 LEU 7 31 34 18 52.9 -0.4 .
1 119 ALA 3 28 30 14 46.7 -0.8 .
1 120 ALA 3 24 34 15 44.1 -0.9 .
1 121 LYS 7 32 44 22 50.0 -0.6 .
1 122 ALA 3 18 19 11 57.9 -0.2 .
1 123 LEU 7 44 68 32 47.1 -0.8 .
1 124 SER 4 18 19 10 52.6 -0.5 .
1 125 THR 4 12 12 9 75.0 0.8 .
1 126 ASP 4 17 14 12 85.7 1.4 >sigma
1 127 PRO 5 16 24 10 41.7 -1.1 >sigma
1 128 ALA 3 10 11 8 72.7 0.7 .
1 129 SER 4 17 21 13 61.9 0.1 .
1 130 PRO 5 7 14 5 35.7 -1.4 >sigma
1 131 ASN 6 9 13 4 30.8 -1.7 >sigma
1 132 LEU 7 41 54 27 50.0 -0.6 .
1 133 LYS 7 28 46 20 43.5 -1.0 .
1 134 SER 4 11 12 8 66.7 0.3 .
1 135 GLN 7 27 26 16 61.5 0.0 .
1 136 LEU 7 39 73 30 41.1 -1.1 >sigma
1 137 ALA 3 21 24 14 58.3 -0.1 .
1 138 ALA 3 13 17 4 23.5 -2.1 >sigma
1 139 ALA 3 25 27 9 33.3 -1.5 >sigma
1 140 ALA 3 32 34 19 55.9 -0.3 .
1 141 ARG 7 24 18 9 50.0 -0.6 .
1 142 ALA 3 30 18 10 55.6 -0.3 .
1 143 VAL 5 58 61 32 52.5 -0.5 .
1 144 THR 4 36 32 22 68.8 0.4 .
1 145 ASP 4 24 17 15 88.2 1.5 >sigma
1 146 SER 4 20 26 8 30.8 -1.7 >sigma
1 147 ILE 6 67 70 40 57.1 -0.2 .
1 148 ASN 6 28 20 19 95.0 1.9 >sigma
1 149 GLN 7 16 15 10 66.7 0.3 .
1 150 LEU 7 55 59 32 54.2 -0.4 .
1 151 ILE 6 61 50 31 62.0 0.1 .
1 152 THR 4 23 15 14 93.3 1.8 >sigma
1 153 MET 6 17 17 11 64.7 0.2 .
1 154 CYS 4 23 16 14 87.5 1.5 >sigma
1 155 THR 4 15 20 13 65.0 0.2 .
1 156 GLN 7 5 8 5 62.5 0.1 .
1 157 GLN 7 3 9 3 33.3 -1.5 >sigma
1 158 ALA 3 1 5 1 20.0 -2.3 >sigma
stop_
save_
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