NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
493840 |
2kr7   |
16629 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2kr7
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 151
_NOE_completeness_stats.Total_atom_count 2371
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 822
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 50.5
_NOE_completeness_stats.Constraint_unexpanded_count 2415
_NOE_completeness_stats.Constraint_count 2415
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1836
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 624
_NOE_completeness_stats.Constraint_surplus_count 150
_NOE_completeness_stats.Constraint_observed_count 1641
_NOE_completeness_stats.Constraint_expected_count 1710
_NOE_completeness_stats.Constraint_matched_count 863
_NOE_completeness_stats.Constraint_unmatched_count 778
_NOE_completeness_stats.Constraint_exp_nonobs_count 847
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 608 570 321 56.3 0.9 .
medium-range 272 277 120 43.3 -0.8 .
long-range 761 863 422 48.9 -0.1 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 0 0 0 0 0 0 0 0 0 0 . 0 . .
shell 2.00 2.50 194 139 0 19 63 37 12 6 2 0 . 0 71.6 71.6
shell 2.50 3.00 311 202 0 7 40 81 46 17 10 1 . 0 65.0 67.5
shell 3.00 3.50 453 214 0 1 22 81 65 32 13 0 . 0 47.2 57.9
shell 3.50 4.00 752 308 0 1 4 49 124 81 39 10 . 0 41.0 50.5
shell 4.00 4.50 1161 327 0 0 2 12 102 131 61 19 . 0 28.2 41.4
shell 4.50 5.00 1727 260 0 0 0 2 15 83 118 42 . 0 15.1 31.5
shell 5.00 5.50 2029 145 0 0 0 0 2 20 62 61 . 0 7.1 24.1
shell 5.50 6.00 2252 42 0 0 0 0 1 0 14 27 . 0 1.9 18.4
shell 6.00 6.50 2529 4 0 0 0 0 0 1 1 2 . 0 0.2 14.4
shell 6.50 7.00 2835 0 0 0 0 0 0 0 0 0 . 0 0.0 11.5
shell 7.00 7.50 2926 0 0 0 0 0 0 0 0 0 . 0 0.0 9.6
shell 7.50 8.00 3155 0 0 0 0 0 0 0 0 0 . 0 0.0 8.1
shell 8.00 8.50 3308 0 0 0 0 0 0 0 0 0 . 0 0.0 6.9
shell 8.50 9.00 3536 0 0 0 0 0 0 0 0 0 . 0 0.0 6.0
sums . . 27168 1641 0 28 131 262 367 371 320 162 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 2 0 0.0 -3.1 >sigma
1 2 GLN 7 0 7 0 0.0 -3.1 >sigma
1 3 ASN 6 0 8 0 0.0 -3.1 >sigma
1 4 HIS 6 1 6 1 16.7 -2.1 >sigma
1 5 ASP 4 4 6 4 66.7 0.9 .
1 6 LEU 7 7 5 5 100.0 2.9 >sigma
1 7 GLU 5 8 5 4 80.0 1.7 >sigma
1 8 SER 4 10 6 4 66.7 0.9 .
1 9 ILE 6 9 11 5 45.5 -0.4 .
1 10 LYS 7 17 21 13 61.9 0.6 .
1 11 GLN 7 24 29 17 58.6 0.4 .
1 12 ALA 3 21 25 12 48.0 -0.2 .
1 13 ALA 3 22 25 11 44.0 -0.5 .
1 14 LEU 7 49 44 22 50.0 -0.1 .
1 15 ILE 6 58 57 32 56.1 0.3 .
1 16 GLU 5 34 37 21 56.8 0.3 .
1 17 TYR 6 50 43 26 60.5 0.5 .
1 18 GLU 5 28 39 20 51.3 -0.0 .
1 19 VAL 5 40 39 25 64.1 0.8 .
1 20 ARG 7 22 28 12 42.9 -0.5 .
1 21 GLU 5 17 37 11 29.7 -1.3 >sigma
1 22 GLN 7 21 21 12 57.1 0.3 .
1 23 GLY 3 5 7 3 42.9 -0.5 .
1 24 SER 4 15 17 8 47.1 -0.3 .
1 25 SER 4 7 8 2 25.0 -1.6 >sigma
1 26 ILE 6 23 26 10 38.5 -0.8 .
1 27 VAL 5 18 22 8 36.4 -0.9 .
1 28 LEU 7 20 33 11 33.3 -1.1 >sigma
1 29 ASP 4 16 14 8 57.1 0.3 .
1 30 SER 4 17 20 12 60.0 0.5 .
1 31 ASN 6 25 25 13 52.0 0.0 .
1 32 ILE 6 39 40 23 57.5 0.4 .
1 33 SER 4 11 12 7 58.3 0.4 .
1 34 LYS 7 15 15 9 60.0 0.5 .
1 35 GLU 5 10 9 6 66.7 0.9 .
1 36 PRO 5 23 27 13 48.1 -0.2 .
1 37 LEU 7 28 37 17 45.9 -0.3 .
1 38 GLU 5 19 19 10 52.6 0.1 .
1 39 PHE 7 5 40 4 10.0 -2.5 >sigma
1 40 ILE 6 19 37 16 43.2 -0.5 .
1 41 ILE 6 19 25 10 40.0 -0.7 .
1 42 GLY 3 12 10 6 60.0 0.5 .
1 43 THR 4 10 20 4 20.0 -1.9 >sigma
1 44 ASN 6 10 12 3 25.0 -1.6 >sigma
1 45 GLN 7 24 20 12 60.0 0.5 .
1 46 ILE 6 55 43 24 55.8 0.3 .
1 47 ILE 6 38 45 19 42.2 -0.6 .
1 48 ALA 3 20 12 8 66.7 0.9 .
1 49 GLY 3 26 20 14 70.0 1.1 >sigma
1 50 LEU 7 57 63 27 42.9 -0.5 .
1 51 GLU 5 31 32 16 50.0 -0.1 .
1 52 LYS 7 14 16 6 37.5 -0.9 .
1 53 ALA 3 28 24 17 70.8 1.2 >sigma
1 54 VAL 5 43 40 21 52.5 0.1 .
1 55 LEU 7 21 22 12 54.5 0.2 .
1 56 LYS 7 26 22 14 63.6 0.7 .
1 57 ALA 3 35 22 13 59.1 0.5 .
1 58 GLN 7 13 12 3 25.0 -1.6 >sigma
1 59 ILE 6 25 25 12 48.0 -0.2 .
1 60 GLY 3 20 16 8 50.0 -0.1 .
1 61 GLU 5 12 15 7 46.7 -0.3 .
1 62 TRP 10 31 37 16 43.2 -0.5 .
1 63 GLU 5 27 20 11 55.0 0.2 .
1 64 GLU 5 23 22 14 63.6 0.7 .
1 65 VAL 5 29 31 18 58.1 0.4 .
1 66 VAL 5 37 25 20 80.0 1.7 >sigma
1 67 ILE 6 51 49 31 63.3 0.7 .
1 68 ALA 3 24 19 11 57.9 0.4 .
1 69 PRO 5 20 21 11 52.4 0.0 .
1 70 GLU 5 15 15 7 46.7 -0.3 .
1 71 GLU 5 20 18 10 55.6 0.2 .
1 72 ALA 3 21 26 14 53.8 0.1 .
1 73 TYR 6 6 11 3 27.3 -1.5 >sigma
1 74 GLY 3 15 11 6 54.5 0.2 .
1 75 VAL 5 6 8 5 62.5 0.7 .
1 76 TYR 6 22 17 13 76.5 1.5 >sigma
1 77 GLU 5 13 13 7 53.8 0.1 .
1 78 SER 4 2 7 0 0.0 -3.1 >sigma
1 79 SER 4 7 8 3 37.5 -0.9 .
1 80 TYR 6 18 13 9 69.2 1.1 >sigma
1 81 LEU 7 32 23 13 56.5 0.3 .
1 82 GLN 7 13 17 7 41.2 -0.6 .
1 83 GLU 5 15 13 8 61.5 0.6 .
1 84 VAL 5 27 26 8 30.8 -1.3 >sigma
1 85 PRO 5 16 19 10 52.6 0.1 .
1 86 ARG 7 18 20 10 50.0 -0.1 .
1 87 ASP 4 11 18 9 50.0 -0.1 .
1 88 GLN 7 16 18 7 38.9 -0.8 .
1 89 PHE 7 50 53 26 49.1 -0.2 .
1 90 GLU 5 11 10 6 60.0 0.5 .
1 91 GLY 3 10 8 6 75.0 1.4 >sigma
1 92 ILE 6 28 21 15 71.4 1.2 >sigma
1 93 GLU 5 6 6 3 50.0 -0.1 .
1 94 LEU 7 39 50 20 40.0 -0.7 .
1 95 GLU 5 22 21 12 57.1 0.3 .
1 96 LYS 7 26 23 15 65.2 0.8 .
1 97 GLY 3 13 12 7 58.3 0.4 .
1 98 MET 6 28 30 14 46.7 -0.3 .
1 99 SER 4 18 10 9 90.0 2.3 >sigma
1 100 VAL 5 31 38 16 42.1 -0.6 .
1 101 PHE 7 16 23 12 52.2 0.0 .
1 102 GLY 3 19 17 10 58.8 0.4 .
1 103 GLN 7 28 14 12 85.7 2.1 >sigma
1 104 THR 4 18 22 10 45.5 -0.4 .
1 105 GLU 5 10 8 4 50.0 -0.1 .
1 106 ASP 4 8 12 5 41.7 -0.6 .
1 107 ASN 6 14 6 4 66.7 0.9 .
1 108 GLN 7 19 17 10 58.8 0.4 .
1 109 THR 4 26 23 13 56.5 0.3 .
1 110 ILE 6 23 30 14 46.7 -0.3 .
1 111 GLN 7 12 19 8 42.1 -0.6 .
1 112 ALA 3 10 20 7 35.0 -1.0 >sigma
1 113 ILE 6 37 30 20 66.7 0.9 .
1 114 ILE 6 45 70 24 34.3 -1.1 >sigma
1 115 LYS 7 33 35 15 42.9 -0.5 .
1 116 ASP 4 31 21 15 71.4 1.2 >sigma
1 117 PHE 7 39 39 23 59.0 0.4 .
1 118 SER 4 13 14 8 57.1 0.3 .
1 119 ALA 3 9 8 5 62.5 0.7 .
1 120 THR 4 10 10 5 50.0 -0.1 .
1 121 HIS 6 25 19 12 63.2 0.7 .
1 122 VAL 5 44 45 20 44.4 -0.4 .
1 123 MET 6 28 33 14 42.4 -0.6 .
1 124 VAL 5 28 40 13 32.5 -1.2 >sigma
1 125 ASP 4 28 25 14 56.0 0.3 .
1 126 TYR 6 26 31 19 61.3 0.6 .
1 127 ASN 6 12 10 7 70.0 1.1 >sigma
1 128 HIS 6 14 11 6 54.5 0.2 .
1 129 PRO 5 8 11 5 45.5 -0.4 .
1 130 LEU 7 10 12 4 33.3 -1.1 >sigma
1 131 ALA 3 11 11 8 72.7 1.3 >sigma
1 132 GLY 3 14 10 6 60.0 0.5 .
1 133 LYS 7 15 16 7 43.8 -0.5 .
1 134 THR 4 25 18 12 66.7 0.9 .
1 135 LEU 7 29 34 14 41.2 -0.6 .
1 136 ALA 3 31 26 15 57.7 0.4 .
1 137 PHE 7 51 52 27 51.9 0.0 .
1 138 ARG 7 38 37 17 45.9 -0.3 .
1 139 PHE 7 55 62 27 43.5 -0.5 .
1 140 LYS 7 44 48 25 52.1 0.0 .
1 141 VAL 5 51 31 23 74.2 1.4 >sigma
1 142 LEU 7 25 35 12 34.3 -1.1 >sigma
1 143 GLY 3 23 19 12 63.2 0.7 .
1 144 PHE 7 30 27 12 44.4 -0.4 .
1 145 ARG 7 28 25 11 44.0 -0.5 .
1 146 GLU 5 10 14 7 50.0 -0.1 .
1 147 VAL 5 16 20 11 55.0 0.2 .
1 148 SER 4 11 10 6 60.0 0.5 .
1 149 GLU 5 8 6 5 83.3 1.9 >sigma
1 150 GLU 5 7 8 5 62.5 0.7 .
1 151 GLU 5 4 4 3 75.0 1.4 >sigma
stop_
save_
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