NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage position program type subtype subsubtype
649423 6pk9 30622 cing 1-original 1 XPLOR/CNS distance hydrogen bond simple


# Restraints file 1: hydrogenbond_LINKA.tbl
!Hydrogen bond restraints

! for G1/ C20  base pair 
  assign (residue 1 and name N1)  (residue 20 and name N3)    2.95 0.2 0.2
  assign (residue 1 and name O6)  (residue 20 and name N4)    2.91 0.2 0.2
  assign (residue 1 and name N2)  (residue 20 and name O2)    2.86 0.2 0.2
  assign (residue 1 and name H1)  (residue 20 and name N3)    1.95 0.2 0.2
  assign (residue 1 and name O6)  (residue 20 and name H41)   1.91 0.2 0.2
  assign (residue 1 and name H21) (residue 20 and name O2)    1.86 0.2 0.2
! for G2/ C19  base pair 
  assign (residue 2 and name N1)  (residue 19 and name N3)    2.95 0.2 0.2 
  assign (residue 2 and name O6)  (residue 19 and name N4)    2.91 0.2 0.2 
  assign (residue 2 and name N2)  (residue 19 and name O2)    2.86 0.2 0.2 
  assign (residue 2 and name H1)  (residue 19 and name N3)    1.95 0.2 0.2 
  assign (residue 2 and name O6)  (residue 19 and name H41)   1.91 0.2 0.2 
  assign (residue 2 and name H21) (residue 19 and name O2)    1.86 0.2 0.2
! for A3/ U18 base pair
  assign (residue 3 and name N1)  (residue 18 and name N3)    2.73 0.2 0.2
  assign (residue 3 and name N6)  (residue 18 and name O4)    2.92 0.2 0.2
  assign (residue 3 and name N1)  (residue 18 and name H3)    1.73 0.2 0.2
  assign (residue 3 and name H61) (residue 18 and name O4)    1.92 0.2 0.2
! for G4/ C17  base pair 
  assign (residue 4 and name N1)  (residue 17 and name N3)    2.95 0.2 0.2 
  assign (residue 4 and name O6)  (residue 17 and name N4)    2.91 0.2 0.2 
  assign (residue 4 and name N2)  (residue 17 and name O2)    2.86 0.2 0.2 
  assign (residue 4 and name H1)  (residue 17 and name N3)    1.95 0.2 0.2 
  assign (residue 4 and name O6)  (residue 17 and name H41)   1.91 0.2 0.2 
  assign (residue 4 and name H21) (residue 17 and name O2)    1.86 0.2 0.2
! for G6/ C15  base pair 
  assign (residue 6 and name N1)  (residue 15 and name N3)    2.95 0.2 0.2 
  assign (residue 6 and name O6)  (residue 15 and name N4)    2.91 0.2 0.2 
  assign (residue 6 and name N2)  (residue 15 and name O2)    2.86 0.2 0.2 
  assign (residue 6 and name H1)  (residue 15 and name N3)    1.95 0.2 0.2 
  assign (residue 6 and name O6)  (residue 15 and name H41)   1.91 0.2 0.2 
  assign (residue 6 and name H21) (residue 15 and name O2)    1.86 0.2 0.2

!U-G basepair Hydrogen Bonds

! for G5/ U16 base pair
assign (resid 5 and name O6) (resid 16 and name H3)  1.9 0.1 0.30
assign (resid 5 and name O6) (resid 16 and name N3)  3.0 0.28 0.08
assign (resid 5 and name H1) (resid 16 and name O2)  1.9 0.1 0.30
assign (resid 5 and name N1) (resid 16 and name O2)  3.0 0.28 0.08

! for U7/ G14 base pair
!assign (resid 14 and name O6) (resid 7 and name H3)  1.9 0.1 0.30
!assign (resid 14 and name O6) (resid 7 and name N3)  3.0 0.28 0.08
!assign (resid 14 and name H1) (resid 7 and name O2)  1.9 0.1 0.30
!assign (resid 14 and name N1) (resid 7 and name O2)  3.0 0.28 0.08
assign (resid  7 and name N3) (resid 14 and name O6)  2.95 0.31  0.22 !UG516
assign (resid  7 and name O2) (resid 14 and name N1)  2.95 0.31  0.22 !UG516# Restraints file 2: D_1000241105_mr_P2.xplor-nih.V1


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