NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage position program type
519510 2ldt 17682 cing 1-original 2 XPLOR/CNS planarity


restraints plane

!G1-C31
 group
  select= ((resid 1 and (name n1 or name c6 or name c2)) or
              (resid 31 and (name n3)))
  weight=80.0
 end

group
  select= ((resid 1 and (name n1)) or
              (resid 31 and (name n3 or name c2 or name c4)))
  weight=80.0
 end

!G2-C30
 group
  select= ((resid 2 and (name n1 or name c6 or name c2)) or
              (resid 30 and (name n3)))
  weight=40.0
 end

group
  select= ((resid 2 and (name n1)) or
              (resid 30 and (name n3 or name c2 or name c4)))
  weight=40.0
 end

!G3-C29
 group
  select= ((resid 3 and (name n1 or name c6 or name c2)) or
              (resid 29 and (name n3)))
  weight=40.0
 end

group
  select= ((resid 3 and (name n1)) or
              (resid 29 and (name n3 or name c2 or name c4)))
  weight=40.0
 end

!G4-C28
 group
  select= ((resid 4 and (name n1 or name c6 or name c2)) or
              (resid 28 and (name n3)))
  weight=20.0
 end

group
  select= ((resid 4 and (name n1)) or
              (resid 28 and (name n3 or name c2 or name c4)))
  weight=20.0
 end

!A5-G27
 group
  select= ((resid 27 and (name n1 or name c6 or name c2)) or
              (resid 5 and (name n1)))
  weight=20.0
 end

group
  select= ((resid 27 and (name n1)) or
              (resid 5 and (name n1 or name c6 or name c2)))
  weight=20.0
 end

!G6-C26
 group
  select= ((resid 6 and (name n1 or name c6 or name c2)) or
              (resid 26 and (name n3)))
  weight=10.0
 end

group
  select= ((resid 6 and (name n1)) or
              (resid 26 and (name n3 or name c2 or name c4)))
  weight=10.0
 end




!C13-G18
 group
  select= ((resid 18 and (name n1 or name c6 or name c2)) or
              (resid 13 and (name n3)))
  weight=80.0
 end

group
  select= ((resid 18 and (name n1)) or
              (resid 13 and (name n3 or name c2 or name c4)))
  weight=80.0
 end

!C12-G19
 group
  select= ((resid 19 and (name n1 or name c6 or name c2)) or
              (resid 12 and (name n3)))
  weight=40.0
 end

group
  select= ((resid 19 and (name n1)) or
              (resid 12 and (name n3 or name c2 or name c4)))
  weight=40.0
 end

!G11-U20

 group
  select= ((resid 11 and (name n1 or name c6 or name c2)) or
              (resid 20 and (name n3)))
  weight=20.0
 end

group
  select= ((resid 11 and (name n1)) or
              (resid 20 and (name n3 or name c2 or name c4)))
  weight=20.0
 end

!G10-U21

 group
  select= ((resid 10 and (name n1 or name c6 or name c2)) or
              (resid 21 and (name n3)))
  weight=10.0
 end

group
  select= ((resid 10 and (name n1)) or
              (resid 21 and (name n3 or name c2 or name c4)))
  weight=10.0
 end




!G14-A17
 group
  select= ((resid 14 and (name n3 or name c4 or name c2)) or
              (resid 17 and (name n6)))
  weight=10.0
 end

group
  select= ((resid 14 and (name n3)) or
              (resid 17 and (name n3 or name n1 or name c6)))
  weight=10.0
 end
end
remarks refinement of RNA using torsion angle and base-base positional database potentials of mean force
remarks In this example, there is also dipolar coupling cross-validation.
remarks Clore, G.M. & Kuszewski, J. (2003) Inproving the accuracy
remarks of NMR structures of RNA by means of conformational database
remarks potentials of mean force as assessed by complete dipolar
remarks coupling cross-validation.  J. Am. Chem. Soc. 125, 1518-1525






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