NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
650121 |
6o6w   |
30584 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_6o6w
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 147
_NOE_completeness_stats.Total_atom_count 2249
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 775
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 44.6
_NOE_completeness_stats.Constraint_unexpanded_count 1770
_NOE_completeness_stats.Constraint_count 1770
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1727
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 68
_NOE_completeness_stats.Constraint_intraresidue_count 292
_NOE_completeness_stats.Constraint_surplus_count 0
_NOE_completeness_stats.Constraint_observed_count 1410
_NOE_completeness_stats.Constraint_expected_count 1727
_NOE_completeness_stats.Constraint_matched_count 771
_NOE_completeness_stats.Constraint_unmatched_count 639
_NOE_completeness_stats.Constraint_exp_nonobs_count 956
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 652 550 382 69.5 1.0 >sigma
medium-range 141 222 64 28.8 -0.6 .
long-range 617 955 325 34.0 -0.4 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 6 3 0 0 0 1 0 2 0 0 . 0 50.0 50.0
shell 2.00 2.50 223 167 0 2 36 57 23 8 28 1 . 1 74.9 74.2
shell 2.50 3.00 283 161 0 0 2 23 40 18 44 5 . 6 56.9 64.6
shell 3.00 3.50 424 172 0 0 1 13 36 22 71 10 . 9 40.6 53.7
shell 3.50 4.00 791 268 0 0 0 3 35 30 151 16 . 15 33.9 44.6
shell 4.00 4.50 1284 333 0 0 0 0 12 33 175 26 . 33 25.9 36.7
shell 4.50 5.00 1695 207 0 0 0 0 0 18 125 16 . 24 12.2 27.9
shell 5.00 5.50 1951 77 0 0 0 0 0 0 41 6 . 28 3.9 20.9
shell 5.50 6.00 2278 16 0 0 0 0 0 0 0 3 . 13 0.7 15.7
shell 6.00 6.50 2555 4 0 0 0 0 0 0 0 0 . 4 0.2 12.3
shell 6.50 7.00 2878 2 0 0 0 0 0 0 0 0 . 2 0.1 9.8
shell 7.00 7.50 3134 0 0 0 0 0 0 0 0 0 . 0 0.0 8.1
shell 7.50 8.00 3503 0 0 0 0 0 0 0 0 0 . 0 0.0 6.7
shell 8.00 8.50 3680 0 0 0 0 0 0 0 0 0 . 0 0.0 5.7
shell 8.50 9.00 4180 0 0 0 0 0 0 0 0 0 . 0 0.0 4.9
sums . . 28865 1410 0 2 39 97 146 131 635 83 . 135 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 1 2 0 0.0 -3.1 >sigma
1 2 SER 4 3 6 2 33.3 -1.0 .
1 3 LYS 7 4 9 4 44.4 -0.2 .
1 4 GLY 3 5 7 3 42.9 -0.3 .
1 5 THR 4 9 6 5 83.3 2.2 >sigma
1 6 VAL 5 13 8 7 87.5 2.5 >sigma
1 7 SER 4 10 8 5 62.5 0.9 .
1 8 GLU 5 4 8 2 25.0 -1.5 >sigma
1 9 PRO 5 9 11 2 18.2 -1.9 >sigma
1 10 THR 4 20 16 8 50.0 0.1 .
1 11 THR 4 25 22 12 54.5 0.4 .
1 12 VAL 5 29 19 14 73.7 1.6 >sigma
1 13 ALA 3 17 16 10 62.5 0.9 .
1 14 PHE 7 34 39 15 38.5 -0.6 .
1 15 ASP 4 15 15 9 60.0 0.8 .
1 16 VAL 5 31 37 18 48.6 0.0 .
1 17 ARG 7 10 24 7 29.2 -1.2 >sigma
1 18 PRO 5 18 38 12 31.6 -1.1 >sigma
1 19 GLY 3 15 16 7 43.8 -0.3 .
1 20 GLY 3 16 19 8 42.1 -0.4 .
1 21 VAL 5 17 15 9 60.0 0.8 .
1 22 VAL 5 27 21 12 57.1 0.6 .
1 23 HIS 6 24 18 12 66.7 1.2 >sigma
1 24 SER 4 15 11 5 45.5 -0.2 .
1 25 PHE 7 19 19 8 42.1 -0.4 .
1 26 SER 4 12 19 7 36.8 -0.7 .
1 27 HIS 6 19 19 12 63.2 1.0 .
1 28 ASN 6 15 20 10 50.0 0.1 .
1 29 VAL 5 17 29 11 37.9 -0.7 .
1 30 GLY 3 8 8 6 75.0 1.7 >sigma
1 31 PRO 5 5 6 3 50.0 0.1 .
1 32 GLY 3 5 8 4 50.0 0.1 .
1 33 ASP 4 8 14 6 42.9 -0.3 .
1 34 LYS 7 9 14 6 42.9 -0.3 .
1 35 TYR 6 30 33 16 48.5 0.0 .
1 36 THR 4 30 26 18 69.2 1.3 >sigma
1 37 CYS 4 29 24 16 66.7 1.2 >sigma
1 38 MET 6 23 26 9 34.6 -0.9 .
1 39 PHE 7 32 30 11 36.7 -0.7 .
1 40 THR 4 25 21 10 47.6 -0.0 .
1 41 TYR 6 26 44 12 27.3 -1.3 >sigma
1 42 ALA 3 23 27 14 51.9 0.2 .
1 43 SER 4 28 24 12 50.0 0.1 .
1 44 GLN 7 32 33 17 51.5 0.2 .
1 45 GLY 3 15 18 8 44.4 -0.2 .
1 46 GLY 3 7 7 6 85.7 2.4 >sigma
1 47 THR 4 14 12 9 75.0 1.7 >sigma
1 48 ASN 6 16 22 9 40.9 -0.5 .
1 49 GLU 5 26 26 10 38.5 -0.6 .
1 50 GLN 7 15 15 10 66.7 1.2 >sigma
1 51 TRP 10 48 64 27 42.2 -0.4 .
1 52 GLN 7 32 31 15 48.4 0.0 .
1 53 MET 6 23 43 10 23.3 -1.6 >sigma
1 54 SER 4 27 24 12 50.0 0.1 .
1 55 LEU 7 41 50 23 46.0 -0.1 .
1 56 GLY 3 17 14 8 57.1 0.6 .
1 57 THR 4 22 23 12 52.2 0.3 .
1 58 SER 4 19 20 10 50.0 0.1 .
1 59 GLU 5 14 11 9 81.8 2.1 >sigma
1 60 ASP 4 11 16 9 56.3 0.5 .
1 61 HIS 6 16 15 7 46.7 -0.1 .
1 62 GLN 7 15 20 9 45.0 -0.2 .
1 63 HIS 6 25 26 12 46.2 -0.1 .
1 64 PHE 7 60 44 29 65.9 1.1 >sigma
1 65 THR 4 18 21 9 42.9 -0.3 .
1 66 CYS 4 24 21 12 57.1 0.6 .
1 67 THR 4 23 28 13 46.4 -0.1 .
1 68 ILE 6 25 48 13 27.1 -1.4 >sigma
1 69 TRP 10 40 57 25 43.9 -0.3 .
1 70 ARG 7 23 51 13 25.5 -1.5 >sigma
1 71 PRO 5 15 27 11 40.7 -0.5 .
1 72 GLN 7 14 31 11 35.5 -0.8 .
1 73 GLY 3 13 13 8 61.5 0.9 .
1 74 LYS 7 14 29 8 27.6 -1.3 >sigma
1 75 SER 4 15 26 9 34.6 -0.9 .
1 76 TYR 6 9 12 6 50.0 0.1 .
1 77 LEU 7 30 42 15 35.7 -0.8 .
1 78 TYR 6 25 24 16 66.7 1.2 >sigma
1 79 PHE 7 33 47 21 44.7 -0.2 .
1 80 THR 4 24 21 14 66.7 1.2 >sigma
1 81 GLN 7 25 31 14 45.2 -0.2 .
1 82 PHE 7 18 46 11 23.9 -1.6 >sigma
1 83 LYS 7 22 30 10 33.3 -1.0 .
1 84 ALA 3 31 27 17 63.0 0.9 .
1 85 GLU 5 15 24 7 29.2 -1.2 >sigma
1 86 VAL 5 34 49 17 34.7 -0.9 .
1 87 ARG 7 28 22 16 72.7 1.6 >sigma
1 88 GLY 3 14 11 9 81.8 2.1 >sigma
1 89 ALA 3 21 25 10 40.0 -0.5 .
1 90 GLU 5 14 13 7 53.8 0.4 .
1 91 ILE 6 24 52 14 26.9 -1.4 >sigma
1 92 GLU 5 18 19 12 63.2 1.0 .
1 93 TYR 6 30 28 19 67.9 1.3 >sigma
1 94 ALA 3 22 25 9 36.0 -0.8 .
1 95 MET 6 17 25 9 36.0 -0.8 .
1 96 ALA 3 31 29 17 58.6 0.7 .
1 97 TYR 6 34 43 21 48.8 0.0 .
1 98 SER 4 16 27 11 40.7 -0.5 .
1 99 LYS 7 18 30 12 40.0 -0.5 .
1 100 ALA 3 13 18 6 33.3 -1.0 .
1 101 ALA 3 19 16 8 50.0 0.1 .
1 102 PHE 7 16 13 7 53.8 0.4 .
1 103 GLU 5 12 10 7 70.0 1.4 >sigma
1 104 ARG 7 10 8 6 75.0 1.7 >sigma
1 105 GLU 5 15 14 6 42.9 -0.3 .
1 106 SER 4 8 6 4 66.7 1.2 >sigma
1 107 ASP 4 13 20 9 45.0 -0.2 .
1 108 VAL 5 20 26 10 38.5 -0.6 .
1 109 PRO 5 14 20 11 55.0 0.4 .
1 110 LEU 7 25 43 15 34.9 -0.9 .
1 111 LYS 7 17 22 9 40.9 -0.5 .
1 112 THR 4 18 14 11 78.6 1.9 >sigma
1 113 GLU 5 16 22 9 40.9 -0.5 .
1 114 GLU 5 23 34 12 35.3 -0.8 .
1 115 PHE 7 32 47 22 46.8 -0.1 .
1 116 GLU 5 21 24 13 54.2 0.4 .
1 117 VAL 5 21 26 10 38.5 -0.6 .
1 118 THR 4 20 17 9 52.9 0.3 .
1 119 LYS 7 15 17 8 47.1 -0.1 .
1 120 THR 4 15 19 9 47.4 -0.1 .
1 121 ALA 3 17 25 7 28.0 -1.3 >sigma
1 122 VAL 5 33 42 20 47.6 -0.0 .
1 123 ALA 3 16 20 11 55.0 0.4 .
1 124 HIS 6 27 32 13 40.6 -0.5 .
1 125 ARG 7 14 29 10 34.5 -0.9 .
1 126 PRO 5 11 10 6 60.0 0.8 .
1 127 GLY 3 8 7 6 85.7 2.4 >sigma
1 128 ALA 3 11 14 7 50.0 0.1 .
1 129 PHE 7 18 28 13 46.4 -0.1 .
1 130 LYS 7 5 17 4 23.5 -1.6 >sigma
1 131 ALA 3 6 21 6 28.6 -1.3 >sigma
1 132 GLU 5 8 15 5 33.3 -1.0 .
1 133 LEU 7 29 37 20 54.1 0.4 .
1 134 SER 4 17 20 8 40.0 -0.5 .
1 135 LYS 7 21 44 11 25.0 -1.5 >sigma
1 136 LEU 7 30 45 14 31.1 -1.1 >sigma
1 137 VAL 5 29 29 15 51.7 0.2 .
1 138 ILE 6 24 51 12 23.5 -1.6 >sigma
1 139 VAL 5 32 33 13 39.4 -0.6 .
1 140 ALA 3 26 31 12 38.7 -0.6 .
1 141 LYS 7 22 22 12 54.5 0.4 .
1 142 ALA 3 16 16 6 37.5 -0.7 .
1 143 SER 4 12 8 5 62.5 0.9 .
1 144 ARG 7 5 9 5 55.6 0.5 .
1 145 THR 4 4 9 4 44.4 -0.2 .
1 146 GLU 5 6 9 6 66.7 1.2 >sigma
1 147 LEU 7 4 5 4 80.0 2.0 >sigma
stop_
save_
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