NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
644797 |
6q44   |
27146 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_6q44
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 178
_NOE_completeness_stats.Total_atom_count 2882
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 1009
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 36.3
_NOE_completeness_stats.Constraint_unexpanded_count 1683
_NOE_completeness_stats.Constraint_count 1683
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2353
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 505
_NOE_completeness_stats.Constraint_surplus_count 5
_NOE_completeness_stats.Constraint_observed_count 1173
_NOE_completeness_stats.Constraint_expected_count 2348
_NOE_completeness_stats.Constraint_matched_count 852
_NOE_completeness_stats.Constraint_unmatched_count 321
_NOE_completeness_stats.Constraint_exp_nonobs_count 1496
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 541 826 418 50.6 1.0 >sigma
medium-range 202 487 139 28.5 -0.5 .
long-range 430 1035 295 28.5 -0.5 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 33 19 0 2 9 3 2 3 0 0 . 0 57.6 57.6
shell 2.00 2.50 265 185 1 17 44 64 42 12 4 1 . 0 69.8 68.5
shell 2.50 3.00 397 204 0 3 41 56 64 36 2 2 . 0 51.4 58.7
shell 3.00 3.50 602 198 0 0 10 74 59 49 5 1 . 0 32.9 46.7
shell 3.50 4.00 1051 246 0 0 0 29 110 94 10 3 . 0 23.4 36.3
shell 4.00 4.50 1596 180 0 0 0 1 41 122 12 4 . 0 11.3 26.2
shell 4.50 5.00 2191 106 0 0 0 0 0 63 35 8 . 0 4.8 18.5
shell 5.00 5.50 2734 28 0 0 0 0 0 4 10 14 . 0 1.0 13.1
shell 5.50 6.00 3207 7 0 0 0 0 0 0 0 7 . 0 0.2 9.7
shell 6.00 6.50 3599 0 0 0 0 0 0 0 0 0 . 0 0.0 7.5
shell 6.50 7.00 4048 0 0 0 0 0 0 0 0 0 . 0 0.0 5.9
shell 7.00 7.50 4327 0 0 0 0 0 0 0 0 0 . 0 0.0 4.9
shell 7.50 8.00 4891 0 0 0 0 0 0 0 0 0 . 0 0.0 4.1
shell 8.00 8.50 5226 0 0 0 0 0 0 0 0 0 . 0 0.0 3.4
shell 8.50 9.00 5582 0 0 0 0 0 0 0 0 0 . 0 0.0 3.0
sums . . 39749 1173 1 22 104 227 318 383 78 40 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 GLY 3 0 2 0 0.0 -2.6 >sigma
1 2 ALA 3 1 5 1 20.0 -1.2 >sigma
1 3 MET 6 2 8 2 25.0 -0.9 .
1 4 GLY 3 2 8 2 25.0 -0.9 .
1 5 PRO 5 2 7 2 28.6 -0.7 .
1 6 PRO 5 2 7 2 28.6 -0.7 .
1 7 SER 4 1 7 1 14.3 -1.6 >sigma
1 8 SER 4 4 10 1 10.0 -1.9 >sigma
1 9 ARG 7 4 10 2 20.0 -1.2 >sigma
1 10 ASP 4 5 10 4 40.0 0.1 .
1 11 ALA 3 6 15 6 40.0 0.1 .
1 12 VAL 5 6 13 5 38.5 0.0 .
1 13 ARG 7 5 12 4 33.3 -0.3 .
1 14 VAL 5 6 15 6 40.0 0.1 .
1 15 THR 4 6 12 6 50.0 0.8 .
1 16 ALA 3 7 9 6 66.7 1.9 >sigma
1 17 SER 4 5 6 4 66.7 1.9 >sigma
1 18 ALA 3 6 8 5 62.5 1.6 >sigma
1 19 HIS 6 5 8 4 50.0 0.8 .
1 20 MET 6 18 31 15 48.4 0.7 .
1 21 LYS 7 2 9 2 22.2 -1.1 >sigma
1 22 HIS 6 2 12 2 16.7 -1.5 >sigma
1 23 TRP 10 27 51 19 37.3 -0.1 .
1 24 LEU 7 23 48 18 37.5 -0.0 .
1 25 GLU 5 4 15 2 13.3 -1.7 >sigma
1 26 PRO 5 8 31 5 16.1 -1.5 >sigma
1 27 VAL 5 24 46 21 45.7 0.5 .
1 28 LEU 7 12 37 9 24.3 -0.9 .
1 29 CYS 4 8 13 5 38.5 0.0 .
1 30 GLU 5 12 17 7 41.2 0.2 .
1 31 ALA 3 15 20 10 50.0 0.8 .
1 32 GLY 3 6 10 5 50.0 0.8 .
1 33 LEU 7 18 48 15 31.3 -0.5 .
1 34 GLY 3 8 10 5 50.0 0.8 .
1 35 HIS 6 4 11 4 36.4 -0.1 .
1 36 ASN 6 7 10 3 30.0 -0.6 .
1 37 TYR 6 12 27 7 25.9 -0.8 .
1 38 LYS 7 13 25 9 36.0 -0.1 .
1 39 VAL 5 25 39 17 43.6 0.4 .
1 40 ASP 4 11 9 7 77.8 2.7 >sigma
1 41 LYS 7 10 25 7 28.0 -0.7 .
1 42 VAL 5 25 37 16 43.2 0.3 .
1 43 LEU 7 25 48 15 31.3 -0.5 .
1 44 LYS 7 9 42 5 11.9 -1.8 >sigma
1 45 VAL 5 16 55 11 20.0 -1.2 >sigma
1 46 LEU 7 12 37 9 24.3 -0.9 .
1 47 ARG 7 20 33 15 45.5 0.5 .
1 48 ILE 6 21 51 15 29.4 -0.6 .
1 49 TYR 6 9 21 7 33.3 -0.3 .
1 50 PRO 5 8 19 6 31.6 -0.4 .
1 51 ARG 7 3 16 3 18.8 -1.3 >sigma
1 52 SER 4 3 9 2 22.2 -1.1 >sigma
1 53 ASN 6 4 13 2 15.4 -1.5 >sigma
1 54 THR 4 5 11 2 18.2 -1.4 >sigma
1 55 LEU 7 18 25 11 44.0 0.4 .
1 56 SER 4 11 14 5 35.7 -0.2 .
1 57 SER 4 9 27 5 18.5 -1.3 >sigma
1 58 LEU 7 11 40 10 25.0 -0.9 .
1 59 PRO 5 3 30 3 10.0 -1.9 >sigma
1 60 LEU 7 20 60 13 21.7 -1.1 >sigma
1 61 CYS 4 20 34 16 47.1 0.6 .
1 62 LEU 7 19 57 11 19.3 -1.3 >sigma
1 63 CYS 4 12 37 9 24.3 -0.9 .
1 64 ASP 4 17 34 11 32.4 -0.4 .
1 65 ALA 3 18 29 13 44.8 0.4 .
1 66 ASN 6 16 23 13 56.5 1.2 >sigma
1 67 TYR 6 29 45 19 42.2 0.3 .
1 68 LYS 7 12 38 9 23.7 -1.0 .
1 69 ILE 6 22 60 11 18.3 -1.3 >sigma
1 70 LEU 7 25 54 18 33.3 -0.3 .
1 71 ALA 3 23 33 16 48.5 0.7 .
1 72 PHE 7 24 35 15 42.9 0.3 .
1 73 ALA 3 24 26 17 65.4 1.8 >sigma
1 74 ASN 6 20 31 13 41.9 0.3 .
1 75 TYR 6 26 35 21 60.0 1.5 >sigma
1 76 LYS 7 22 36 14 38.9 0.0 .
1 77 ALA 3 25 31 19 61.3 1.6 >sigma
1 78 ILE 6 35 53 26 49.1 0.7 .
1 79 ALA 3 19 22 14 63.6 1.7 >sigma
1 80 ALA 3 16 20 9 45.0 0.5 .
1 81 PHE 7 13 33 9 27.3 -0.7 .
1 82 GLU 5 11 19 8 42.1 0.3 .
1 83 ARG 7 10 18 4 22.2 -1.1 >sigma
1 84 LYS 7 11 23 6 26.1 -0.8 .
1 85 GLU 5 7 19 5 26.3 -0.8 .
1 86 ARG 7 5 11 5 45.5 0.5 .
1 87 ARG 7 9 14 6 42.9 0.3 .
1 88 ARG 7 7 26 4 15.4 -1.5 >sigma
1 89 VAL 5 12 53 8 15.1 -1.6 >sigma
1 90 THR 4 20 46 13 28.3 -0.7 .
1 91 GLN 7 16 28 6 21.4 -1.1 >sigma
1 92 ASN 6 9 16 7 43.8 0.4 .
1 93 LEU 7 10 38 6 15.8 -1.5 >sigma
1 94 LEU 7 13 65 9 13.8 -1.7 >sigma
1 95 ASN 6 17 21 10 47.6 0.6 .
1 96 SER 4 11 17 8 47.1 0.6 .
1 97 GLU 5 6 35 6 17.1 -1.4 >sigma
1 98 ILE 6 24 56 16 28.6 -0.7 .
1 99 MET 6 26 38 19 50.0 0.8 .
1 100 ILE 6 29 53 19 35.8 -0.2 .
1 101 HIS 6 14 15 11 73.3 2.4 >sigma
1 102 SER 4 15 25 8 32.0 -0.4 .
1 103 PHE 7 24 56 19 33.9 -0.3 .
1 104 THR 4 14 19 9 47.4 0.6 .
1 105 ILE 6 21 43 19 44.2 0.4 .
1 106 ARG 7 11 23 11 47.8 0.7 .
1 107 PHE 7 9 19 8 42.1 0.3 .
1 108 TYR 6 26 53 20 37.7 -0.0 .
1 109 ASN 6 12 27 11 40.7 0.2 .
1 110 ASP 4 6 14 6 42.9 0.3 .
1 111 ASP 4 7 13 6 46.2 0.5 .
1 112 GLN 7 8 30 6 20.0 -1.2 >sigma
1 113 VAL 5 26 53 20 37.7 -0.0 .
1 114 GLN 7 24 33 17 51.5 0.9 .
1 115 GLY 3 6 9 5 55.6 1.2 >sigma
1 116 PHE 7 15 45 10 22.2 -1.1 >sigma
1 117 PHE 7 22 50 13 26.0 -0.8 .
1 118 ASP 4 7 11 5 45.5 0.5 .
1 119 GLY 3 12 14 7 50.0 0.8 .
1 120 LEU 7 18 34 12 35.3 -0.2 .
1 121 LYS 7 12 17 9 52.9 1.0 .
1 122 PHE 7 23 45 19 42.2 0.3 .
1 123 LYS 7 8 11 6 54.5 1.1 >sigma
1 124 GLN 7 16 33 13 39.4 0.1 .
1 125 LYS 7 7 9 5 55.6 1.2 >sigma
1 126 ALA 3 6 7 5 71.4 2.3 >sigma
1 127 SER 4 5 18 5 27.8 -0.7 .
1 128 LEU 7 8 14 7 50.0 0.8 .
1 129 PHE 7 20 28 17 60.7 1.5 >sigma
1 130 PRO 5 7 26 6 23.1 -1.0 >sigma
1 131 GLY 3 10 20 9 45.0 0.5 .
1 132 TYR 6 16 45 15 33.3 -0.3 .
1 133 LEU 7 12 44 12 27.3 -0.7 .
1 134 VAL 5 25 54 22 40.7 0.2 .
1 135 LEU 7 36 55 23 41.8 0.2 .
1 136 GLU 5 12 21 7 33.3 -0.3 .
1 137 ILE 6 42 60 29 48.3 0.7 .
1 138 ASN 6 16 23 10 43.5 0.4 .
1 139 ASP 4 17 21 11 52.4 1.0 .
1 140 PHE 7 42 53 29 54.7 1.1 >sigma
1 141 SER 4 11 16 8 50.0 0.8 .
1 142 MET 6 17 29 10 34.5 -0.3 .
1 143 PHE 7 17 42 17 40.5 0.2 .
1 144 ASN 6 8 19 7 36.8 -0.1 .
1 145 ARG 7 3 7 3 42.9 0.3 .
1 146 ASP 4 6 15 6 40.0 0.1 .
1 147 GLN 7 4 11 3 27.3 -0.7 .
1 148 LEU 7 6 18 6 33.3 -0.3 .
1 149 ILE 6 17 22 12 54.5 1.1 >sigma
1 150 LEU 7 22 60 15 25.0 -0.9 .
1 151 SER 4 6 9 5 55.6 1.2 >sigma
1 152 ASN 6 15 27 12 44.4 0.4 .
1 153 ALA 3 16 31 12 38.7 0.0 .
1 154 GLY 3 4 9 4 44.4 0.4 .
1 155 THR 4 10 14 7 50.0 0.8 .
1 156 ILE 6 36 49 28 57.1 1.3 >sigma
1 157 GLU 5 12 15 7 46.7 0.6 .
1 158 PHE 7 11 19 6 31.6 -0.4 .
1 159 LEU 7 18 37 12 32.4 -0.4 .
1 160 TYR 6 15 36 13 36.1 -0.1 .
1 161 GLY 3 13 12 8 66.7 1.9 >sigma
1 162 THR 4 12 24 9 37.5 -0.0 .
1 163 PRO 5 4 18 4 22.2 -1.1 >sigma
1 164 ARG 7 7 20 7 35.0 -0.2 .
1 165 TYR 6 9 35 9 25.7 -0.8 .
1 166 ILE 6 24 35 19 54.3 1.1 >sigma
1 167 ALA 3 14 25 10 40.0 0.1 .
1 168 ARG 7 10 26 6 23.1 -1.0 >sigma
1 169 PHE 7 17 38 11 28.9 -0.6 .
1 170 ILE 6 32 41 24 58.5 1.4 >sigma
1 171 GLU 5 14 23 12 52.2 0.9 .
1 172 GLN 7 8 11 5 45.5 0.5 .
1 173 GLU 5 2 8 2 25.0 -0.9 .
1 174 PHE 7 5 11 5 45.5 0.5 .
1 175 SER 4 7 10 7 70.0 2.2 >sigma
1 176 ASP 4 4 7 4 57.1 1.3 >sigma
1 177 GLU 5 5 8 5 62.5 1.6 >sigma
1 178 GLU 5 2 3 2 66.7 1.9 >sigma
stop_
save_
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