NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
644508 6ccw 30402 cing 4-filtered-FRED Wattos check stereo assignment distance


data_6ccw


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        52
    _Stereo_assign_list.Swap_count           0
    _Stereo_assign_list.Swap_percentage      0.0
    _Stereo_assign_list.Deassign_count       0
    _Stereo_assign_list.Deassign_percentage  0.0
    _Stereo_assign_list.Model_count          15
    _Stereo_assign_list.Total_e_low_states   1.099
    _Stereo_assign_list.Total_e_high_states  37.393
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1  1 DT Q2' 13 no 100.0  99.0 0.182 0.184 0.002  8 0 no 0.093 0 0 
       1  2 DT Q2'  3 no 100.0  97.2 1.881 1.934 0.053 10 0 no 0.459 0 0 
       1  2 DT Q5' 47 no 100.0  99.0 1.793 1.812 0.019  2 0 no 0.316 0 0 
       1  3 DA Q2' 17 no 100.0  99.9 1.969 1.972 0.002  7 1 no 0.134 0 0 
       1  3 DA Q6  41 no  46.7  10.2 0.031 0.302 0.271  3 0 no 0.743 0 6 
       1  4 DG Q2' 12 no 100.0 100.0 0.366 0.366 0.000  8 0 no 0.013 0 0 
       1  4 DG Q2  31 no 100.0  99.9 1.030 1.031 0.001  5 1 no 0.082 0 0 
       1  4 DG Q5' 39 no  86.7  99.7 0.011 0.011 0.000  4 0 no 0.016 0 0 
       1  5 DG Q2' 11 no 100.0 100.0 1.070 1.070 0.000  8 0 no 0.025 0 0 
       1  5 DG Q2  46 no 100.0 100.0 0.527 0.527 0.000  2 0 no 0.000 0 0 
       1  5 DG Q5' 10 no 100.0 100.0 1.374 1.374 0.000  8 0 no 0.031 0 0 
       1  6 DG Q2'  4 no 100.0  84.5 1.469 1.739 0.270  9 0 no 0.704 0 7 
       1  7 DT Q2'  9 no 100.0  98.8 0.067 0.067 0.001  8 0 no 0.050 0 0 
       1  7 DT Q5' 16 no 100.0  86.9 0.702 0.809 0.106  7 0 no 0.713 0 3 
       1  8 DT Q2' 27 no 100.0 100.0 0.635 0.636 0.000  6 0 no 0.040 0 0 
       1  8 DT Q5' 38 no 100.0 100.0 0.292 0.292 0.000  4 0 no 0.024 0 0 
       1  9 DA Q2' 26 no 100.0 100.0 0.254 0.254 0.000  6 0 no 0.000 0 0 
       1  9 DA Q5' 25 no  93.3  96.0 0.030 0.031 0.001  6 0 no 0.075 0 0 
       1 10 DG Q2'  8 no 100.0 100.0 0.143 0.143 0.000  8 0 no 0.000 0 0 
       1 10 DG Q5' 45 no  80.0  80.6 0.008 0.009 0.002  2 0 no 0.097 0 0 
       1 11 DG Q2' 24 no 100.0  99.8 0.204 0.204 0.000  6 0 no 0.051 0 0 
       1 11 DG Q2  52 no 100.0 100.0 0.527 0.527 0.000  1 0 no 0.000 0 0 
       1 11 DG Q5' 37 no 100.0  99.7 0.546 0.547 0.001  4 0 no 0.141 0 0 
       1 12 DG Q2' 23 no 100.0 100.0 1.039 1.039 0.000  6 0 no 0.000 0 0 
       1 12 DG Q5' 36 no 100.0  99.9 2.317 2.319 0.001  4 0 no 0.102 0 0 
       1 13 DT Q2' 30 no 100.0 100.0 0.082 0.082 0.000  5 0 no 0.000 0 0 
       1 14 DT Q2' 22 no 100.0  99.9 0.323 0.323 0.000  6 0 no 0.040 0 0 
       1 15 DA Q2' 40 no 100.0 100.0 0.232 0.232 0.000  3 0 no 0.000 0 0 
       1 16 DG Q2'  7 no 100.0  99.7 0.769 0.771 0.002  8 0 no 0.088 0 0 
       1 16 DG Q2  51 no 100.0 100.0 0.524 0.524 0.000  1 0 no 0.000 0 0 
       1 17 DG Q2'  6 no 100.0  99.9 1.669 1.670 0.001  8 0 no 0.051 0 0 
       1 17 DG Q2  44 no 100.0 100.0 0.627 0.627 0.000  2 0 no 0.000 0 0 
       1 17 DG Q5' 43 no 100.0 100.0 0.000 0.000 0.000  2 0 no 0.029 0 0 
       1 18 DG Q2' 21 no 100.0  99.9 1.175 1.176 0.001  6 0 no 0.091 0 0 
       1 18 DG Q5' 20 no  93.3  99.6 0.508 0.510 0.002  6 0 no 0.104 0 0 
       1 19 DT Q2' 15 no  80.0  89.1 0.557 0.625 0.068  7 0 no 0.756 0 2 
       1 19 DT Q5' 50 no   6.7 100.0 0.000 0.000 0.000  1 0 no 0.000 0 0 
       1 20 DT Q2' 29 no 100.0  99.9 0.596 0.597 0.000  5 0 no 0.068 0 0 
       1 20 DT Q5' 49 no  46.7 100.0 0.340 0.340 0.000  1 0 no 0.030 0 0 
       1 21 DA Q2' 35 no 100.0  99.9 1.061 1.063 0.001  4 0 no 0.053 0 0 
       1 21 DA Q5' 34 no  13.3  98.7 0.006 0.006 0.000  4 0 no 0.026 0 0 
       1 22 DG Q2'  5 no 100.0 100.0 0.042 0.042 0.000  8 0 no 0.016 0 0 
       1 22 DG Q2  48 no 100.0 100.0 0.531 0.531 0.000  1 0 no 0.000 0 0 
       1 22 DG Q5' 33 no  40.0  95.8 0.009 0.009 0.000  4 0 no 0.055 0 0 
       1 23 DG Q2' 14 no 100.0 100.0 1.706 1.706 0.000  7 0 no 0.061 0 0 
       1 23 DG Q2  42 no 100.0 100.0 0.550 0.550 0.000  2 0 no 0.000 0 0 
       1 23 DG Q5' 19 no 100.0 100.0 1.380 1.380 0.000  6 0 no 0.022 0 0 
       1 24 DG Q2'  2 no 100.0  91.7 1.283 1.398 0.116 10 0 no 0.515 0 2 
       1 24 DG Q5' 32 no 100.0 100.0 0.692 0.692 0.000  4 0 no 0.033 0 0 
       1 25 DT Q2'  1 no 100.0  73.4 0.479 0.653 0.173 10 0 no 0.607 0 2 
       1 25 DT Q5' 28 no 100.0 100.0 1.578 1.578 0.001  5 0 no 0.050 0 0 
       1 26 DT Q5' 18 no 100.0 100.0 1.109 1.109 0.000  6 0 no 0.049 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Friday, May 3, 2024 8:45:27 AM GMT (wattos1)