NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
620004 5x4f 36060 cing 4-filtered-FRED Wattos check stereo assignment distance


data_5x4f


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        109
    _Stereo_assign_list.Swap_count           31
    _Stereo_assign_list.Swap_percentage      28.4
    _Stereo_assign_list.Deassign_count       38
    _Stereo_assign_list.Deassign_percentage  34.9
    _Stereo_assign_list.Model_count          10
    _Stereo_assign_list.Total_e_low_states   55.783
    _Stereo_assign_list.Total_e_high_states  424.523
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1  3 GLU QB  88 no   70.0  82.5  1.026  1.245 0.218  3  1 yes 1.290  7  9 
       1  3 GLU QG 109 no   80.0  57.3  0.183  0.319 0.136  1  1 no  0.078  0  0 
       1  4 TYR QB 107 no   90.0 100.0  0.002  0.002 0.000  1  0 no  0.000  0  0 
       1  4 TYR QD 106 no  100.0 100.0  0.017  0.017 0.000  1  0 no  0.176  0  0 
       1  4 TYR QE  57 no  100.0  99.7 36.375 36.487 0.112  6  2 no  0.231  0  0 
       1  5 ILE QG 105 no  100.0 100.0  0.000  0.000 0.000  1  0 no  0.014  0  0 
       1  6 ARG QB  44 no   70.0  48.2  2.172  4.503 2.331  7  3 yes 1.917 15 19 
       1  6 ARG QD   2 no   60.0  16.8  0.735  4.387 3.651 16  6 yes 1.705 15 24 
       1  6 ARG QG  82 no   60.0  13.3  0.012  0.093 0.080  4  3 no  0.275  0  0 
       1  7 VAL QG  19 no   60.0  93.4  0.612  0.655 0.043 10  4 no  0.496  0  0 
       1  9 GLU QB  33 no   70.0  54.8  2.049  3.738 1.689  8  3 yes 3.421 13 15 
       1  9 GLU QG  65 no   60.0  66.3  0.211  0.317 0.107  5  2 no  0.550  0  1 
       1 10 ASP QB  50 no  100.0  72.9  1.144  1.570 0.426  6  0 yes 0.949  0  5 
       1 11 GLU QB  76 yes 100.0  97.9  0.707  0.722 0.015  4  1 no  0.190  0  0 
       1 11 GLU QG  75 yes  80.0  51.7  0.270  0.522 0.252  4  1 no  0.956  0  2 
       1 12 ASN QB  43 no   80.0  51.6  0.298  0.577 0.280  7  3 no  0.684  0  5 
       1 12 ASN QD  99 no  100.0  10.3  0.012  0.120 0.107  2  2 no  0.646  0  2 
       1 13 ASP QB  32 yes 100.0  92.0  5.071  5.515 0.444  8  3 no  0.919  0  4 
       1 14 GLU QB  80 no   70.0  86.4  0.788  0.912 0.124  4  2 yes 1.151  3  8 
       1 14 GLU QG  95 no   50.0  55.1  0.047  0.086 0.039  2  1 no  0.236  0  0 
       1 15 PRO QB  98 yes 100.0  96.3  0.573  0.595 0.022  2  2 no  0.133  0  0 
       1 15 PRO QD  22 no  100.0 100.0  0.273  0.273 0.000  9  4 no  0.007  0  0 
       1 15 PRO QG  15 yes 100.0  85.5  4.431  5.184 0.752 11  6 no  0.350  0  0 
       1 16 ILE QG  61 yes 100.0  96.2  2.304  2.395 0.090  5  0 no  0.290  0  0 
       1 17 GLU QB  72 yes 100.0  97.1  1.589  1.635 0.047  4  0 no  0.249  0  0 
       1 17 GLU QG  79 no   70.0  61.8  0.741  1.199 0.458  4  2 yes 1.619  2  6 
       1 18 ILE QG 104 no   90.0  90.2  0.041  0.046 0.004  1  0 no  0.211  0  0 
       1 20 SER QB  28 no   40.0  52.4  1.107  2.114 1.006  8  2 yes 1.798  4  8 
       1 21 GLU QB  53 no   70.0  62.0  2.138  3.451 1.313  6  1 no  0.990  0  6 
       1 21 GLU QG 103 no   70.0  63.4  0.107  0.169 0.062  1  0 no  0.681  0  1 
       1 22 ASP QB  71 no   60.0  15.9  0.192  1.209 1.017  4  0 yes 1.125  5 17 
       1 23 ASP QB  70 no   60.0   9.3  0.027  0.286 0.260  4  0 no  0.783  0  4 
       1 24 GLY QA  74 no  100.0  94.6  0.279  0.295 0.016  4  1 no  0.162  0  0 
       1 26 VAL QG  12 no  100.0 100.0  0.362  0.362 0.000 11  0 no  0.000  0  0 
       1 27 LEU QB  73 yes  90.0  91.1  0.510  0.559 0.050  4  1 no  0.702  0  1 
       1 27 LEU QD  27 no   50.0  51.6  1.035  2.005 0.970  8  1 yes 1.627  8  9 
       1 28 LEU QB  16 no  100.0  95.5  1.446  1.514 0.068 10  3 no  0.347  0  0 
       1 28 LEU QD  81 no  100.0   0.0  0.000  0.000 0.000  4  3 no  0.000  0  0 
       1 29 SER QB  84 no  100.0   0.0  0.000  0.000 0.000  3  0 no  0.000  0  0 
       1 31 VAL QG  69 yes 100.0 100.0  0.119  0.119 0.000  4  0 no  0.000  0  0 
       1 34 GLN QB  46 no  100.0  95.9  6.374  6.649 0.275  7  4 no  0.289  0  0 
       1 34 GLN QE  49 yes 100.0  99.1  5.266  5.316 0.050  6  0 no  0.236  0  0 
       1 34 GLN QG  56 yes 100.0  96.8  5.625  5.811 0.186  6  2 no  0.236  0  0 
       1 35 PHE QB  94 no  100.0  95.9  2.023  2.110 0.086  2  1 no  0.280  0  0 
       1 35 PHE QD  93 no  100.0 100.0 12.646 12.648 0.002  2  0 no  0.074  0  0 
       1 36 PRO QB  97 no  100.0 100.0  0.003  0.003 0.000  2  2 no  0.000  0  0 
       1 36 PRO QD  26 no  100.0  98.3  3.275  3.333 0.058  9  7 no  0.210  0  0 
       1 36 PRO QG  36 no  100.0 100.0  0.470  0.470 0.000  8  4 no  0.000  0  0 
       1 37 GLY QA  78 no  100.0 100.0  0.315  0.315 0.000  4  2 no  0.000  0  0 
       1 39 SER QB  87 no   40.0  52.2  0.626  1.199 0.574  3  1 yes 1.519  4  4 
       1 40 GLY QA  35 yes 100.0  95.4  2.704  2.834 0.130  8  4 no  0.350  0  0 
       1 41 LEU QB  24 no   50.0  41.3  0.074  0.178 0.104  9  5 no  0.658  0  4 
       1 41 LEU QD   9 no  100.0  99.9  2.569  2.571 0.002 12  4 no  0.113  0  0 
       1 42 ARG QB  59 yes 100.0  99.6  1.477  1.483 0.006  6  3 no  0.131  0  0 
       1 42 ARG QD   1 yes  90.0  77.2  8.068 10.449 2.381 17 12 yes 2.026  8 10 
       1 42 ARG QG   3 yes 100.0  93.4  4.785  5.123 0.338 15  8 yes 0.583  0  5 
       1 43 TYR QB  31 yes 100.0  91.8  4.363  4.755 0.392  8  3 yes 1.632  1  1 
       1 43 TYR QD  92 no   90.0  97.6  2.053  2.104 0.051  2  0 no  0.531  0  1 
       1 43 TYR QE  67 no   90.0  86.3 11.198 12.977 1.778  5  4 yes 1.484  1  3 
       1 45 ASN QB  58 no   70.0  61.9  1.874  3.025 1.151  6  3 yes 1.746  3  6 
       1 46 PRO QB 102 no  100.0   0.0  0.000  0.000 0.000  1  0 no  0.000  0  0 
       1 46 PRO QD  77 no   90.0  58.3  0.029  0.050 0.021  4  2 no  0.240  0  0 
       1 46 PRO QG  90 no  100.0  99.7  0.244  0.245 0.001  3  2 no  0.082  0  0 
       1 47 VAL QG  38 no  100.0  72.0  3.719  5.163 1.444  7  1 yes 1.599  5  9 
       1 48 SER QB  63 no   50.0  37.5  0.594  1.586 0.992  5  1 yes 1.315  5 10 
       1 49 GLN QB  64 no   60.0  10.8  0.142  1.314 1.173  5  2 no  0.683  0  4 
       1 49 GLN QE  34 yes 100.0  76.6  0.864  1.127 0.263  8  4 yes 1.171  1  1 
       1 49 GLN QG  14 no   50.0  24.0  0.371  1.547 1.177 11  5 yes 1.004  1 10 
       1 50 SER QB  41 yes  90.0  48.4  0.850  1.757 0.907  7  2 yes 1.653  1  2 
       1 51 MET QB  40 no   80.0  55.5  0.445  0.801 0.356  7  2 no  0.779  0  1 
       1 52 ARG QB   6 yes  90.0  45.5  1.915  4.210 2.295 13  7 yes 1.928  4 11 
       1 52 ARG QD  25 no   80.0  59.3  2.423  4.086 1.662  9  6 yes 1.820  4  5 
       1 52 ARG QG  96 yes  90.0  88.5  2.240  2.531 0.291  2  2 yes 1.172  1  1 
       1 53 GLY QA  55 no  100.0  38.9  1.232  3.164 1.932  6  2 yes 1.398  1  1 
       1 54 VAL QG  68 no  100.0   0.0  0.000  0.000 0.000  4  0 no  0.000  0  0 
       1 55 ARG QB  13 no   70.0  71.3  1.852  2.598 0.746 11  4 yes 1.420 12 24 
       1 55 ARG QD  21 yes  80.0  22.8  0.465  2.042 1.576  9  4 no  0.855  0  3 
       1 55 ARG QG  45 yes  80.0  42.8  0.133  0.312 0.178  7  4 no  0.797  0  2 
       1 56 LEU QB  18 no  100.0  88.4  1.052  1.190 0.138 10  4 yes 1.096  1  1 
       1 56 LEU QD  66 no  100.0  45.9  0.006  0.012 0.007  5  3 no  0.210  0  0 
       1 57 VAL QG  52 no  100.0  99.9  4.256  4.260 0.004  6  1 no  0.100  0  0 
       1 58 GLU QB  86 yes 100.0 100.0  0.630  0.630 0.000  3  1 no  0.000  0  0 
       1 58 GLU QG  54 no   90.0  86.5  1.580  1.826 0.246  6  2 yes 1.040  1  3 
       1 59 GLY QA  83 no   90.0  94.7  0.058  0.061 0.003  3  0 no  0.139  0  0 
       1 60 ILE QG   8 yes 100.0  92.8  8.961  9.654 0.693 12  2 no  0.726  0  1 
       1 61 LEU QD  85 no   90.0  91.1  3.947  4.331 0.384  3  1 yes 1.539  1  3 
       1 62 HIS QB 101 yes 100.0  98.9  0.114  0.115 0.001  1  0 no  0.113  0  0 
       1 64 PRO QB 108 yes 100.0 100.0  1.000  1.001 0.000  1  1 no  0.054  0  0 
       1 64 PRO QD  42 yes 100.0  79.3  3.986  5.030 1.043  7  3 no  0.261  0  0 
       1 64 PRO QG  89 no  100.0   0.0  0.000  0.000 0.000  3  2 no  0.000  0  0 
       1 65 ASP QB  20 no  100.0  98.8  0.511  0.517 0.006  9  0 no  0.149  0  0 
       1 67 GLY QA  60 no   90.0  95.6  0.251  0.262 0.012  5  0 no  0.228  0  0 
       1 68 TRP QB  48 yes  80.0  67.5  0.129  0.191 0.062  6  0 no  0.344  0  0 
       1 69 GLY QA  62 yes  80.0  64.7  2.619  4.046 1.427  5  1 yes 1.346  1  6 
       1 70 ASN QB   5 no   70.0  62.4  3.374  5.406 2.032 13  5 yes 1.984 12 17 
       1 70 ASN QD  47 yes  80.0  82.2  1.437  1.748 0.311  7  6 yes 1.255  1  3 
       1 71 LEU QB   7 yes 100.0  92.3  2.699  2.925 0.226 12  1 no  0.818  0  1 
       1 71 LEU QD  51 no   90.0  83.1  3.783  4.553 0.769  6  1 yes 2.073  2  3 
       1 72 VAL QG  39 no   90.0  90.7  4.860  5.360 0.499  7  2 yes 1.398  1  3 
       1 73 TYR QB  10 no  100.0  65.0  2.868  4.416 1.548 12  5 no  0.157  0  0 
       1 73 TYR QD  11 no  100.0  99.2 48.722 49.133 0.411 12  6 yes 1.069  1  1 
       1 73 TYR QE 100 no  100.0 100.0  0.017  0.017 0.000  1  0 no  0.223  0  0 
       1 74 VAL QG  30 no  100.0  98.6  9.380  9.513 0.132  8  3 no  0.093  0  0 
       1 75 VAL QG  91 no   90.0  76.8  0.016  0.021 0.005  2  0 no  0.239  0  0 
       1 76 ASN QB   4 no   50.0   3.8  0.170  4.432 4.261 14  9 yes 1.398 11 12 
       1 76 ASN QD  37 no   60.0  62.1  0.100  0.162 0.061  8  8 no  0.061  0  0 
       1 77 TYR QB  29 no  100.0  70.1  2.989  4.261 1.272  8  3 yes 1.825  4  4 
       1 77 TYR QD  17 no  100.0 100.0 30.198 30.207 0.009 10  4 no  0.168  0  0 
       1 77 TYR QE  23 no  100.0  97.9 66.711 68.161 1.450  9  5 yes 1.600  6  8 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Thursday, May 2, 2024 4:35:00 PM GMT (wattos1)