NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
584648 |
2mur   |
25230 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2mur
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 10
_NOE_completeness_stats.Residue_count 123
_NOE_completeness_stats.Total_atom_count 1909
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 671
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 65.2
_NOE_completeness_stats.Constraint_unexpanded_count 4097
_NOE_completeness_stats.Constraint_count 4097
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2162
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 93
_NOE_completeness_stats.Constraint_intraresidue_count 376
_NOE_completeness_stats.Constraint_surplus_count 325
_NOE_completeness_stats.Constraint_observed_count 3303
_NOE_completeness_stats.Constraint_expected_count 1930
_NOE_completeness_stats.Constraint_matched_count 1259
_NOE_completeness_stats.Constraint_unmatched_count 2044
_NOE_completeness_stats.Constraint_exp_nonobs_count 671
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 829 526 319 60.6 -0.4 .
medium-range 819 371 274 73.9 1.1 >sigma
long-range 1499 891 588 66.0 0.2 .
intermolecular 156 142 78 54.9 -1.0 >sigma
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 37 34 0 0 1 7 12 10 3 1 . 0 91.9 91.9
shell 2.00 2.50 236 171 0 2 9 35 48 42 19 12 . 4 72.5 75.1
shell 2.50 3.00 333 252 0 1 11 34 73 57 48 22 . 6 75.7 75.4
shell 3.00 3.50 488 315 0 0 5 26 64 74 76 55 . 15 64.5 70.6
shell 3.50 4.00 836 487 0 0 0 22 78 111 140 81 . 55 58.3 65.2
shell 4.00 4.50 1273 611 0 0 0 4 39 109 171 164 . 124 48.0 58.4
shell 4.50 5.00 1644 544 0 0 0 0 1 62 171 145 . 165 33.1 49.8
shell 5.00 5.50 2118 473 0 0 0 0 1 6 69 190 . 207 22.3 41.5
shell 5.50 6.00 2421 228 0 0 0 0 0 0 5 70 . 153 9.4 33.2
shell 6.00 6.50 2582 117 0 0 0 0 0 1 1 4 . 111 4.5 27.0
shell 6.50 7.00 2948 58 0 0 0 0 0 0 0 0 . 58 2.0 22.1
shell 7.00 7.50 3098 11 0 0 0 0 0 0 0 0 . 11 0.4 18.3
shell 7.50 8.00 3626 1 0 0 0 0 0 0 0 0 . 1 0.0 15.3
shell 8.00 8.50 3627 0 0 0 0 0 0 0 0 0 . 0 0.0 13.1
shell 8.50 9.00 4042 1 0 0 0 0 0 0 0 0 . 1 0.0 11.3
sums . . 29309 3303 0 3 26 128 316 472 703 744 . 911 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 SER 4 0 2 0 0.0 -3.1 >sigma
1 2 HIS 6 0 6 0 0.0 -3.1 >sigma
1 3 MET 6 4 10 2 20.0 -2.1 >sigma
1 4 GLY 3 4 7 1 14.3 -2.4 >sigma
1 5 ALA 3 7 12 2 16.7 -2.2 >sigma
1 6 ALA 3 22 24 8 33.3 -1.4 >sigma
1 7 ALA 3 27 22 13 59.1 -0.1 .
1 8 LEU 7 80 59 36 61.0 -0.0 .
1 9 ARG 7 31 10 6 60.0 -0.1 .
1 10 SER 4 54 28 18 64.3 0.1 .
1 11 CYS 4 63 31 26 83.9 1.1 >sigma
1 12 PRO 5 33 32 12 37.5 -1.2 >sigma
1 13 MET 6 64 36 29 80.6 0.9 .
1 14 CYS 4 35 9 7 77.8 0.8 .
1 15 GLN 7 45 12 6 50.0 -0.6 .
1 16 LYS 7 55 19 15 78.9 0.9 .
1 17 GLU 5 32 13 11 84.6 1.1 >sigma
1 18 PHE 7 113 58 49 84.5 1.1 >sigma
1 19 ALA 3 38 11 10 90.9 1.5 >sigma
1 20 PRO 5 21 12 7 58.3 -0.2 .
1 21 ARG 7 25 12 5 41.7 -1.0 .
1 22 LEU 7 102 43 35 81.4 1.0 .
1 23 THR 4 42 20 16 80.0 0.9 .
1 24 GLN 7 36 25 10 40.0 -1.1 >sigma
1 25 LEU 7 39 27 15 55.6 -0.3 .
1 26 ASP 4 54 24 21 87.5 1.3 >sigma
1 27 VAL 5 111 58 46 79.3 0.9 .
1 28 ASP 4 27 25 16 64.0 0.1 .
1 29 SER 4 29 16 9 56.3 -0.3 .
1 30 HIS 6 56 30 25 83.3 1.1 >sigma
1 31 LEU 7 87 65 41 63.1 0.1 .
1 32 ALA 3 45 35 22 62.9 0.1 .
1 33 GLN 7 48 21 16 76.2 0.7 .
1 34 CYS 4 48 25 21 84.0 1.1 >sigma
1 35 LEU 7 82 58 40 69.0 0.4 .
1 36 ALA 3 47 23 17 73.9 0.6 .
1 37 GLU 5 24 13 11 84.6 1.1 >sigma
1 38 SER 4 27 15 7 46.7 -0.7 .
1 39 THR 4 9 10 3 30.0 -1.6 >sigma
1 40 GLU 5 21 13 9 69.2 0.4 .
1 41 ASP 4 16 12 5 41.7 -1.0 .
1 42 VAL 5 38 11 10 90.9 1.5 >sigma
1 43 THR 4 25 11 7 63.6 0.1 .
1 44 TRP 10 68 45 23 51.1 -0.5 .
2 1 SER 4 0 3 0 0.0 -3.1 >sigma
2 2 HIS 6 30 20 12 60.0 -0.1 .
2 3 MET 6 90 44 35 79.5 0.9 .
2 4 GLN 7 73 43 27 62.8 0.1 .
2 5 ILE 6 131 66 53 80.3 0.9 .
2 6 PHE 7 108 36 32 88.9 1.4 >sigma
2 7 VAL 5 100 53 38 71.7 0.5 .
2 8 LYS 7 48 29 15 51.7 -0.5 .
2 9 THR 4 39 35 16 45.7 -0.8 .
2 10 LEU 7 48 27 21 77.8 0.8 .
2 11 THR 4 26 13 9 69.2 0.4 .
2 12 GLY 3 25 13 9 69.2 0.4 .
2 13 LYS 7 49 29 16 55.2 -0.3 .
2 14 THR 4 50 17 13 76.5 0.7 .
2 15 ILE 6 108 60 48 80.0 0.9 .
2 16 THR 4 63 18 17 94.4 1.6 >sigma
2 17 LEU 7 120 59 38 64.4 0.1 .
2 18 GLU 5 44 24 13 54.2 -0.4 .
2 19 VAL 5 103 54 38 70.4 0.4 .
2 20 GLU 5 48 30 26 86.7 1.2 >sigma
2 21 PRO 5 44 18 11 61.1 -0.0 .
2 22 SER 4 30 11 7 63.6 0.1 .
2 23 ASP 4 57 23 19 82.6 1.0 >sigma
2 24 THR 4 70 33 23 69.7 0.4 .
2 25 ILE 6 130 79 55 69.6 0.4 .
2 26 GLU 5 28 34 11 32.4 -1.5 >sigma
2 27 ASN 6 57 35 20 57.1 -0.2 .
2 28 VAL 5 112 59 37 62.7 0.1 .
2 29 LYS 7 84 71 31 43.7 -0.9 .
2 30 ALA 3 49 25 19 76.0 0.7 .
2 31 LYS 7 71 53 35 66.0 0.2 .
2 32 ILE 6 108 75 55 73.3 0.6 .
2 33 GLN 7 83 44 37 84.1 1.1 >sigma
2 34 ASP 4 30 16 10 62.5 0.0 .
2 35 LYS 7 72 46 29 63.0 0.1 .
2 36 GLU 5 58 31 21 67.7 0.3 .
2 37 GLY 3 33 14 9 64.3 0.1 .
2 38 ILE 6 90 49 34 69.4 0.4 .
2 39 PRO 5 52 40 30 75.0 0.7 .
2 40 PRO 5 56 39 26 66.7 0.3 .
2 41 ASP 4 18 15 8 53.3 -0.4 .
2 42 GLN 7 84 46 35 76.1 0.7 .
2 43 GLN 7 83 65 31 47.7 -0.7 .
2 44 ARG 7 52 38 20 52.6 -0.4 .
2 45 LEU 7 93 70 34 48.6 -0.7 .
2 46 ILE 6 111 69 51 73.9 0.6 .
2 47 PHE 7 73 51 33 64.7 0.2 .
2 48 ALA 3 33 24 14 58.3 -0.2 .
2 49 GLY 3 29 27 17 63.0 0.1 .
2 50 LYS 7 55 35 17 48.6 -0.7 .
2 51 GLN 7 31 31 9 29.0 -1.6 >sigma
2 52 LEU 7 109 79 57 72.2 0.5 .
2 53 GLU 5 24 29 15 51.7 -0.5 .
2 54 ASP 4 28 27 9 33.3 -1.4 >sigma
2 55 GLY 3 2 10 0 0.0 -3.1 >sigma
2 56 ARG 7 51 29 20 69.0 0.4 .
2 57 THR 4 66 27 20 74.1 0.6 .
2 58 LEU 7 145 74 55 74.3 0.6 .
2 59 SER 4 46 15 12 80.0 0.9 .
2 60 ASP 4 49 21 16 76.2 0.7 .
2 61 TYR 6 129 55 47 85.5 1.2 >sigma
2 62 ASN 6 37 18 11 61.1 -0.0 .
2 63 ILE 6 138 59 48 81.4 1.0 .
2 64 GLN 7 36 18 12 66.7 0.3 .
2 65 LYS 7 50 37 22 59.5 -0.1 .
2 66 GLU 5 57 26 21 80.8 1.0 .
2 67 SER 4 52 22 15 68.2 0.3 .
2 68 THR 4 27 17 7 41.2 -1.0 >sigma
2 69 LEU 7 90 63 39 61.9 0.0 .
2 70 HIS 6 43 32 16 50.0 -0.6 .
2 71 LEU 7 59 53 27 50.9 -0.5 .
2 72 VAL 5 97 55 44 80.0 0.9 .
2 73 LEU 7 69 49 23 46.9 -0.7 .
2 74 ARG 7 33 17 9 52.9 -0.4 .
2 75 LEU 7 32 18 11 61.1 -0.0 .
2 76 ARG 7 12 9 5 55.6 -0.3 .
2 77 GLY 3 5 8 3 37.5 -1.2 >sigma
2 78 GLY 3 7 4 2 50.0 -0.6 .
stop_
save_
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