NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
|
|
562513 |
2lt2   |
17957 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2lt2
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 145
_NOE_completeness_stats.Total_atom_count 2304
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 801
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 37.6
_NOE_completeness_stats.Constraint_unexpanded_count 1455
_NOE_completeness_stats.Constraint_count 1455
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2059
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 181
_NOE_completeness_stats.Constraint_intraresidue_count 230
_NOE_completeness_stats.Constraint_surplus_count 4
_NOE_completeness_stats.Constraint_observed_count 1040
_NOE_completeness_stats.Constraint_expected_count 2055
_NOE_completeness_stats.Constraint_matched_count 773
_NOE_completeness_stats.Constraint_unmatched_count 267
_NOE_completeness_stats.Constraint_exp_nonobs_count 1282
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 463 667 369 55.3 1.0 .
medium-range 249 501 170 33.9 -0.3 .
long-range 328 887 234 26.4 -0.7 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 14 6 0 0 0 0 0 4 0 2 . 0 42.9 42.9
shell 2.00 2.50 190 118 0 0 31 29 8 34 1 15 . 0 62.1 60.8
shell 2.50 3.00 393 221 0 0 12 71 35 60 10 33 . 0 56.2 57.8
shell 3.00 3.50 560 217 0 0 2 17 40 82 13 63 . 0 38.8 48.6
shell 3.50 4.00 898 211 0 0 0 10 15 74 28 84 . 0 23.5 37.6
shell 4.00 4.50 1364 151 0 0 0 0 8 31 30 82 . 0 11.1 27.0
shell 4.50 5.00 1916 80 0 0 0 0 2 6 13 59 . 0 4.2 18.8
shell 5.00 5.50 2315 24 0 0 0 0 0 2 0 22 . 0 1.0 13.4
shell 5.50 6.00 2642 11 0 0 0 0 0 0 0 11 . 0 0.4 10.1
shell 6.00 6.50 2926 1 0 0 0 0 0 0 0 1 . 0 0.0 7.9
shell 6.50 7.00 3294 0 0 0 0 0 0 0 0 0 . 0 0.0 6.3
shell 7.00 7.50 3568 0 0 0 0 0 0 0 0 0 . 0 0.0 5.2
shell 7.50 8.00 3932 0 0 0 0 0 0 0 0 0 . 0 0.0 4.3
shell 8.00 8.50 4262 0 0 0 0 0 0 0 0 0 . 0 0.0 3.7
shell 8.50 9.00 4434 0 0 0 0 0 0 0 0 0 . 0 0.0 3.2
sums . . 32708 1040 0 0 45 127 108 293 95 372 . 0 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 3 0 0.0 -2.9 >sigma
1 2 SER 4 0 7 0 0.0 -2.9 >sigma
1 3 LYS 7 1 9 1 11.1 -2.1 >sigma
1 4 ILE 6 4 10 3 30.0 -0.7 .
1 5 GLU 5 4 10 4 40.0 -0.0 .
1 6 GLU 5 3 9 3 33.3 -0.5 .
1 7 PHE 7 13 28 10 35.7 -0.3 .
1 8 LEU 7 15 51 13 25.5 -1.0 >sigma
1 9 THR 4 15 19 10 52.6 0.9 .
1 10 ALA 3 11 11 9 81.8 3.0 >sigma
1 11 GLU 5 7 18 6 33.3 -0.5 .
1 12 GLU 5 14 46 11 23.9 -1.2 >sigma
1 13 GLU 5 18 30 13 43.3 0.2 .
1 14 LYS 7 12 19 9 47.4 0.5 .
1 15 ALA 3 14 20 11 55.0 1.1 >sigma
1 16 ILE 6 25 59 16 27.1 -0.9 .
1 17 VAL 5 17 42 15 35.7 -0.3 .
1 18 ASP 4 13 17 11 64.7 1.8 >sigma
1 19 ALA 3 12 22 8 36.4 -0.3 .
1 20 ILE 6 22 50 16 32.0 -0.6 .
1 21 ARG 7 14 32 9 28.1 -0.9 .
1 22 ASP 4 9 16 7 43.8 0.3 .
1 23 ALA 3 14 25 9 36.0 -0.3 .
1 24 GLU 5 13 20 8 40.0 -0.0 .
1 25 LYS 7 18 21 12 57.1 1.2 >sigma
1 26 ASN 6 17 21 13 61.9 1.6 >sigma
1 27 THR 4 26 36 20 55.6 1.1 >sigma
1 28 SER 4 11 13 8 61.5 1.5 >sigma
1 29 GLY 3 12 16 8 50.0 0.7 .
1 30 GLU 5 14 30 6 20.0 -1.4 >sigma
1 31 ILE 6 22 43 14 32.6 -0.5 .
1 32 ARG 7 13 40 10 25.0 -1.1 >sigma
1 33 VAL 5 12 47 7 14.9 -1.8 >sigma
1 34 HIS 6 27 41 18 43.9 0.3 .
1 35 LEU 7 25 39 15 38.5 -0.1 .
1 36 GLU 5 18 25 14 56.0 1.1 >sigma
1 37 LYS 7 11 30 11 36.7 -0.2 .
1 38 THR 4 11 21 10 47.6 0.5 .
1 39 SER 4 9 21 4 19.0 -1.5 >sigma
1 40 GLU 5 6 14 4 28.6 -0.8 .
1 41 ILE 6 13 32 12 37.5 -0.2 .
1 42 ASP 4 10 20 9 45.0 0.3 .
1 43 VAL 5 15 33 14 42.4 0.2 .
1 44 PHE 7 18 22 13 59.1 1.4 >sigma
1 45 ASP 4 9 22 7 31.8 -0.6 .
1 46 ARG 7 12 50 11 22.0 -1.3 >sigma
1 47 ALA 3 17 34 15 44.1 0.3 .
1 48 MET 6 15 25 12 48.0 0.6 .
1 49 ASP 4 10 19 8 42.1 0.1 .
1 50 VAL 5 21 42 18 42.9 0.2 .
1 51 PHE 7 26 71 23 32.4 -0.6 .
1 52 HIS 6 13 23 10 43.5 0.2 .
1 53 ASN 6 8 19 8 42.1 0.1 .
1 54 LEU 7 11 37 9 24.3 -1.1 >sigma
1 55 LYS 7 7 15 6 40.0 -0.0 .
1 56 MET 6 10 44 8 18.2 -1.6 >sigma
1 57 ASP 4 8 14 8 57.1 1.2 >sigma
1 58 ASN 6 8 11 5 45.5 0.4 .
1 59 THR 4 10 22 7 31.8 -0.6 .
1 60 LYS 7 7 18 6 33.3 -0.5 .
1 61 LEU 7 12 32 9 28.1 -0.9 .
1 62 GLN 7 12 23 10 43.5 0.2 .
1 63 ASN 6 13 37 9 24.3 -1.1 >sigma
1 64 GLY 3 12 21 7 33.3 -0.5 .
1 65 VAL 5 18 47 11 23.4 -1.2 >sigma
1 66 LEU 7 28 68 19 27.9 -0.9 .
1 67 ILE 6 18 57 9 15.8 -1.7 >sigma
1 68 TYR 6 32 51 23 45.1 0.4 .
1 69 VAL 5 26 47 21 44.7 0.3 .
1 70 ALA 3 21 30 15 50.0 0.7 .
1 71 VAL 5 26 44 19 43.2 0.2 .
1 72 GLU 5 16 33 11 33.3 -0.5 .
1 73 ASP 4 12 16 9 56.3 1.2 >sigma
1 74 LYS 7 14 28 10 35.7 -0.3 .
1 75 THR 4 12 15 11 73.3 2.4 >sigma
1 76 PHE 7 30 52 24 46.2 0.4 .
1 77 VAL 5 23 36 19 52.8 0.9 .
1 78 ILE 6 27 58 19 32.8 -0.5 .
1 79 TYR 6 24 35 12 34.3 -0.4 .
1 80 GLY 3 14 23 8 34.8 -0.4 .
1 81 ASP 4 12 29 8 27.6 -0.9 .
1 82 LYS 7 9 14 7 50.0 0.7 .
1 83 GLY 3 7 19 6 31.6 -0.6 .
1 84 ILE 6 22 59 16 27.1 -0.9 .
1 85 ASN 6 14 16 11 68.8 2.0 >sigma
1 86 ASP 4 10 13 8 61.5 1.5 >sigma
1 87 VAL 5 18 36 14 38.9 -0.1 .
1 88 VAL 5 24 48 21 43.8 0.3 .
1 89 SER 4 12 15 8 53.3 0.9 .
1 90 ASP 4 8 11 5 45.5 0.4 .
1 91 ASP 4 8 15 8 53.3 0.9 .
1 92 PHE 7 31 52 26 50.0 0.7 .
1 93 TRP 10 33 54 20 37.0 -0.2 .
1 94 ASP 4 12 16 8 50.0 0.7 .
1 95 THR 4 7 13 7 53.8 1.0 .
1 96 THR 4 16 25 9 36.0 -0.3 .
1 97 ARG 7 22 39 15 38.5 -0.1 .
1 98 ASN 6 12 15 9 60.0 1.4 >sigma
1 99 ALA 3 13 25 10 40.0 -0.0 .
1 100 ILE 6 33 62 26 41.9 0.1 .
1 101 GLN 7 12 30 9 30.0 -0.7 .
1 102 LEU 7 10 19 9 47.4 0.5 .
1 103 GLN 7 18 37 14 37.8 -0.2 .
1 104 PHE 7 31 58 23 39.7 -0.0 .
1 105 LYS 7 10 20 7 35.0 -0.4 .
1 106 GLN 7 13 18 10 55.6 1.1 >sigma
1 107 GLY 3 7 14 5 35.7 -0.3 .
1 108 ASN 6 10 20 7 35.0 -0.4 .
1 109 PHE 7 20 42 15 35.7 -0.3 .
1 110 LYS 7 14 53 9 17.0 -1.7 >sigma
1 111 GLN 7 10 27 8 29.6 -0.8 .
1 112 GLY 3 21 32 17 53.1 0.9 .
1 113 LEU 7 15 57 11 19.3 -1.5 >sigma
1 114 VAL 5 17 42 15 35.7 -0.3 .
1 115 ASP 4 12 22 10 45.5 0.4 .
1 116 GLY 3 13 26 11 42.3 0.2 .
1 117 ILE 6 20 51 14 27.5 -0.9 .
1 118 GLU 5 10 16 8 50.0 0.7 .
1 119 LYS 7 12 29 10 34.5 -0.4 .
1 120 ALA 3 17 25 13 52.0 0.8 .
1 121 GLY 3 15 22 11 50.0 0.7 .
1 122 MET 6 8 15 8 53.3 0.9 .
1 123 ALA 3 10 22 10 45.5 0.4 .
1 124 LEU 7 25 54 18 33.3 -0.5 .
1 125 ALA 3 17 22 13 59.1 1.4 >sigma
1 126 LYS 7 9 17 7 41.2 0.1 .
1 127 TYR 6 23 41 21 51.2 0.8 .
1 128 PHE 7 18 34 12 35.3 -0.3 .
1 129 PRO 5 6 12 5 41.7 0.1 .
1 130 TRP 10 25 29 16 55.2 1.1 >sigma
1 131 LYS 7 10 17 8 47.1 0.5 .
1 132 LYS 7 12 13 8 61.5 1.5 >sigma
1 133 ASP 4 5 9 5 55.6 1.1 >sigma
1 134 ASP 4 12 19 9 47.4 0.5 .
1 135 ILE 6 9 17 5 29.4 -0.8 .
1 136 ASP 4 8 8 4 50.0 0.7 .
1 137 GLU 5 4 18 2 11.1 -2.1 >sigma
1 138 LEU 7 11 37 6 16.2 -1.7 >sigma
1 139 PRO 5 7 18 4 22.2 -1.3 >sigma
1 140 ASN 6 9 25 7 28.0 -0.9 .
1 141 THR 4 13 14 9 64.3 1.7 >sigma
1 142 ILE 6 15 34 10 29.4 -0.8 .
1 143 SER 4 12 17 6 35.3 -0.3 .
1 144 LYS 7 12 14 8 57.1 1.2 >sigma
1 145 GLY 3 10 11 7 63.6 1.7 >sigma
stop_
save_
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