NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing in_recoord stage program type subtype subsubtype
481205 1b3c 4279 cing recoord 4-filtered-FRED Wattos check stereo assignment distance


data_1b3c


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        67
    _Stereo_assign_list.Swap_count           1
    _Stereo_assign_list.Swap_percentage      1.5
    _Stereo_assign_list.Deassign_count       1
    _Stereo_assign_list.Deassign_percentage  1.5
    _Stereo_assign_list.Model_count          40
    _Stereo_assign_list.Total_e_low_states   2.202
    _Stereo_assign_list.Total_e_high_states  48.514
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1  1 LYS QB 65 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.000 0 0 
       1  1 LYS QG 64 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.011 0 0 
       1  2 ASP QB  8 no  100.0 100.0  0.036  0.036 0.000 12 0 no  0.000 0 0 
       1  3 GLY QA 24 no  100.0   0.0  0.000  0.000 0.000  8 0 no  0.073 0 0 
       1  4 TYR QB 23 no   32.5 100.0  0.001  0.001 0.000  8 0 no  0.000 0 0 
       1  4 TYR QD 67 no  100.0   0.0  0.000  0.512 0.512  2 2 no  0.001 0 0 
       1  4 TYR QE 66 no  100.0   0.0  0.000  0.502 0.502  2 2 no  0.001 0 0 
       1  5 LEU QD 22 no  100.0   0.0  0.000  0.000 0.000  8 0 no  0.000 0 0 
       1  6 VAL QG  4 no  100.0 100.0  2.198  2.198 0.000 18 2 no  0.000 0 0 
       1 10 GLY QA 25 no  100.0   0.0  0.000  0.000 0.000  8 2 no  0.000 0 0 
       1 11 CYS QB 26 no   90.0 100.0  0.272  0.272 0.000  7 1 no  0.058 0 0 
       1 12 LYS QB 40 no    0.0   0.0  0.000  0.006 0.006  6 0 no  0.263 0 0 
       1 12 LYS QD 63 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.000 0 0 
       1 12 LYS QG 56 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.018 0 0 
       1 13 LYS QB 39 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.000 0 0 
       1 15 CYS QB 14 no  100.0 100.0  0.476  0.476 0.000 10 4 no  0.038 0 0 
       1 16 TYR QB 21 no  100.0   0.0  0.000  0.000 0.000  8 0 no  0.000 0 0 
       1 18 LEU QB 20 no   77.5 100.0  0.001  0.001 0.000  8 0 no  0.000 0 0 
       1 18 LEU QD  3 no  100.0 100.0  1.467  1.467 0.000 18 0 no  0.000 0 0 
       1 19 GLY QA 19 no    0.0   0.0  0.000  0.006 0.006  8 0 no  0.169 0 0 
       1 21 ASN QB 13 no  100.0   0.0  0.000  0.000 0.000 10 4 no  0.012 0 0 
       1 21 ASN QD 27 no  100.0 100.0  1.491  1.491 0.001  7 4 no  0.081 0 0 
       1 22 ASP QB 38 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.044 0 0 
       1 23 PHE QB 18 no  100.0   0.0  0.000  0.000 0.000  8 0 no  0.037 0 0 
       1 24 CYS QB 37 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.037 0 0 
       1 25 ASN QD 62 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.100 0 0 
       1 26 ARG QB 17 no  100.0   0.0  0.000  0.000 0.000  8 0 no  0.048 0 0 
       1 26 ARG QG 36 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.067 0 0 
       1 27 GLU QB 16 no  100.0   0.0  0.000  0.000 0.000  8 0 no  0.046 0 0 
       1 27 GLU QG 61 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.000 0 0 
       1 28 CYS QB 35 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.000 0 0 
       1 29 LYS QB 55 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.000 0 0 
       1 30 TRP QB 54 no    0.0   0.0  0.000  0.002 0.002  4 0 no  0.248 0 0 
       1 31 LYS QB 60 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.000 0 0 
       1 32 HIS QB 53 no  100.0   0.0  0.000  0.142 0.142  4 0 no  0.503 0 2 
       1 34 GLY QA 52 no  100.0   0.0  0.000  0.002 0.002  4 0 no  0.074 0 0 
       1 35 GLY QA 51 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.069 0 0 
       1 36 SER QB 34 no  100.0   0.0  0.000  0.001 0.001  6 0 no  0.138 0 0 
       1 37 TYR QB 12 no  100.0   0.0  0.000  0.001 0.001 10 0 no  0.084 0 0 
       1 38 GLY QA 33 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.048 0 0 
       1 39 TYR QB 50 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.000 0 0 
       1 40 CYS QB  7 no  100.0   0.0  0.000  0.000 0.000 14 4 no  0.012 0 0 
       1 41 TYR QB  6 no  100.0   0.0  0.000  0.000 0.000 18 4 no  0.000 0 0 
       1 43 PHE QB 11 no  100.0   0.0  0.000  0.000 0.000 10 0 no  0.060 0 0 
       1 44 GLY QA 10 no   95.0  99.5  0.082  0.083 0.000 10 0 no  0.049 0 0 
       1 45 CYS QB 32 no  100.0 100.0  0.000  0.000 0.000  6 0 no  0.035 0 0 
       1 46 TYR QB  5 no   30.0  82.2  0.007  0.009 0.002 18 4 no  0.091 0 0 
       1 46 TYR QD 42 yes  97.5  97.4 38.155 39.169 1.014  5 4 yes 3.359 4 4 
       1 46 TYR QE 59 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.000 0 0 
       1 47 CYS QB 15 no   67.5 100.0  0.015  0.015 0.000  9 4 no  0.000 0 0 
       1 48 GLU QB 49 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.000 0 0 
       1 49 GLY QA 31 no    0.0   0.0  0.000  0.001 0.001  6 0 no  0.090 0 0 
       1 50 LEU QB 48 no   77.5  90.9  0.005  0.005 0.000  4 0 no  0.066 0 0 
       1 50 LEU QD  2 no  100.0   0.0  0.000  0.000 0.000 20 4 no  0.000 0 0 
       1 51 PRO QB 41 no  100.0   0.0  0.000  0.000 0.000  5 0 no  0.027 0 0 
       1 51 PRO QG 58 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.000 0 0 
       1 52 ASP QB 30 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.025 0 0 
       1 53 SER QB 29 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.086 0 0 
       1 55 GLN QE 47 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.017 0 0 
       1 55 GLN QG 28 no  100.0   0.0  0.000  0.000 0.000  6 0 no  0.027 0 0 
       1 57 TRP QB  1 no  100.0  99.8  1.972  1.976 0.004 20 0 no  0.119 0 0 
       1 58 PRO QB 46 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.000 0 0 
       1 59 LEU QB 45 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.055 0 0 
       1 59 LEU QD 57 no  100.0   0.0  0.000  0.000 0.000  2 0 no  0.000 0 0 
       1 60 PRO QB 44 no  100.0   0.0  0.000  0.000 0.000  4 0 no  0.051 0 0 
       1 60 PRO QD 43 no    0.0   0.0  0.000  0.001 0.001  4 0 no  0.083 0 0 
       1 64 CYS QB  9 no   62.5  98.8  0.135  0.136 0.002 12 1 no  0.182 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Monday, April 29, 2024 3:34:21 AM GMT (wattos1)