NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | cing | in_recoord | in_dress | stage | program | type | subtype | subsubtype |
|
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470212 |
1ajw   |
cing | recoord | dress | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1ajw
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 145
_NOE_completeness_stats.Total_atom_count 2346
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 814
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 43.1
_NOE_completeness_stats.Constraint_unexpanded_count 1735
_NOE_completeness_stats.Constraint_count 1735
_NOE_completeness_stats.Constraint_exp_unfiltered_count 1979
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 98
_NOE_completeness_stats.Constraint_intraresidue_count 236
_NOE_completeness_stats.Constraint_surplus_count 29
_NOE_completeness_stats.Constraint_observed_count 1372
_NOE_completeness_stats.Constraint_expected_count 1951
_NOE_completeness_stats.Constraint_matched_count 840
_NOE_completeness_stats.Constraint_unmatched_count 532
_NOE_completeness_stats.Constraint_exp_nonobs_count 1111
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 448 545 300 55.0 1.0 >sigma
medium-range 154 223 82 36.8 -0.6 .
long-range 770 1183 458 38.7 -0.4 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 15 11 0 2 3 5 1 0 0 0 . 0 73.3 73.3
shell 2.00 2.50 246 181 0 99 28 25 5 0 15 7 . 2 73.6 73.6
shell 2.50 3.00 323 185 0 29 32 55 7 0 44 14 . 4 57.3 64.6
shell 3.00 3.50 535 228 0 0 26 62 10 0 81 29 . 20 42.6 54.1
shell 3.50 4.00 832 235 0 0 3 42 9 0 107 48 . 26 28.2 43.1
shell 4.00 4.50 1399 246 0 0 0 0 1 0 144 45 . 56 17.6 32.4
shell 4.50 5.00 2047 189 0 0 0 0 0 0 86 32 . 71 9.2 23.6
shell 5.00 5.50 2229 64 0 0 0 0 0 0 13 13 . 38 2.9 17.6
shell 5.50 6.00 2780 30 0 0 0 0 0 0 0 5 . 25 1.1 13.2
shell 6.00 6.50 3087 3 0 0 0 0 0 0 0 0 . 3 0.1 10.2
shell 6.50 7.00 3369 0 0 0 0 0 0 0 0 0 . 0 0.0 8.1
shell 7.00 7.50 3689 0 0 0 0 0 0 0 0 0 . 0 0.0 6.7
shell 7.50 8.00 3973 0 0 0 0 0 0 0 0 0 . 0 0.0 5.6
shell 8.00 8.50 4360 0 0 0 0 0 0 0 0 0 . 0 0.0 4.8
shell 8.50 9.00 4529 0 0 0 0 0 0 0 0 0 . 0 0.0 4.1
sums . . 33413 1372 0 130 92 189 33 0 490 193 . 245 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 ALA 3 0 3 0 0.0 -2.9 >sigma
1 2 VAL 5 0 8 0 0.0 -2.9 >sigma
1 3 SER 4 1 9 1 11.1 -2.1 >sigma
1 4 ALA 3 2 7 2 28.6 -1.0 >sigma
1 5 ASP 4 3 7 3 42.9 -0.1 .
1 6 PRO 5 5 9 4 44.4 -0.0 .
1 7 ASN 6 5 8 3 37.5 -0.5 .
1 8 VAL 5 4 8 3 37.5 -0.5 .
1 9 PRO 5 6 12 6 50.0 0.3 .
1 10 ASN 6 23 31 15 48.4 0.2 .
1 11 VAL 5 30 42 23 54.8 0.6 .
1 12 VAL 5 19 35 13 37.1 -0.5 .
1 13 VAL 5 33 57 21 36.8 -0.5 .
1 14 THR 4 21 32 15 46.9 0.1 .
1 15 ARG 7 20 25 13 52.0 0.5 .
1 16 LEU 7 37 62 20 32.3 -0.8 .
1 17 THR 4 19 37 13 35.1 -0.6 .
1 18 LEU 7 28 56 20 35.7 -0.6 .
1 19 VAL 5 16 28 9 32.1 -0.8 .
1 20 CYS 4 10 21 7 33.3 -0.7 .
1 21 SER 4 5 12 3 25.0 -1.3 >sigma
1 22 THR 4 9 15 6 40.0 -0.3 .
1 23 ALA 3 18 24 10 41.7 -0.2 .
1 24 PRO 5 6 16 4 25.0 -1.3 >sigma
1 25 GLY 3 8 8 4 50.0 0.3 .
1 26 PRO 5 6 20 3 15.0 -1.9 >sigma
1 27 LEU 7 13 42 9 21.4 -1.5 >sigma
1 28 GLU 5 15 13 7 53.8 0.6 .
1 29 LEU 7 31 57 20 35.1 -0.6 .
1 30 ASP 4 18 10 8 80.0 2.3 >sigma
1 31 LEU 7 32 64 23 35.9 -0.6 .
1 32 THR 4 10 15 8 53.3 0.6 .
1 33 GLY 3 6 7 4 57.1 0.8 .
1 34 ASP 4 5 5 3 60.0 1.0 .
1 35 LEU 7 20 32 10 31.3 -0.9 .
1 36 GLU 5 11 17 7 41.2 -0.2 .
1 37 SER 4 11 15 7 46.7 0.1 .
1 38 PHE 7 24 54 18 33.3 -0.7 .
1 39 LYS 7 13 17 8 47.1 0.2 .
1 40 LYS 7 8 14 6 42.9 -0.1 .
1 41 GLN 7 9 10 5 50.0 0.3 .
1 42 SER 4 18 17 14 82.4 2.4 >sigma
1 43 PHE 7 39 49 23 46.9 0.1 .
1 44 VAL 5 17 25 9 36.0 -0.6 .
1 45 LEU 7 34 52 20 38.5 -0.4 .
1 46 LYS 7 21 44 15 34.1 -0.7 .
1 47 GLU 5 23 23 14 60.9 1.0 >sigma
1 48 GLY 3 14 21 7 33.3 -0.7 .
1 49 VAL 5 31 38 18 47.4 0.2 .
1 50 GLU 5 17 13 7 53.8 0.6 .
1 51 TYR 6 42 34 22 64.7 1.3 >sigma
1 52 ARG 7 18 30 11 36.7 -0.5 .
1 53 ILE 6 25 52 22 42.3 -0.2 .
1 54 LYS 7 23 45 15 33.3 -0.7 .
1 55 ILE 6 29 63 23 36.5 -0.5 .
1 56 SER 4 21 19 13 68.4 1.5 >sigma
1 57 PHE 7 52 66 28 42.4 -0.1 .
1 58 ARG 7 23 30 14 46.7 0.1 .
1 59 VAL 5 30 50 22 44.0 -0.0 .
1 60 ASN 6 16 12 8 66.7 1.4 >sigma
1 61 ARG 7 15 27 9 33.3 -0.7 .
1 62 GLU 5 16 23 8 34.8 -0.6 .
1 63 ILE 6 25 30 16 53.3 0.6 .
1 64 VAL 5 28 39 18 46.2 0.1 .
1 65 SER 4 18 15 10 66.7 1.4 >sigma
1 66 GLY 3 14 11 8 72.7 1.8 >sigma
1 67 MET 6 44 54 26 48.1 0.2 .
1 68 LYS 7 19 33 10 30.3 -0.9 .
1 69 TYR 6 28 53 17 32.1 -0.8 .
1 70 ILE 6 30 44 16 36.4 -0.5 .
1 71 GLN 7 24 35 15 42.9 -0.1 .
1 72 HIS 6 25 41 15 36.6 -0.5 .
1 73 THR 4 32 27 16 59.3 0.9 .
1 74 TYR 6 34 38 14 36.8 -0.5 .
1 75 ARG 7 17 33 14 42.4 -0.1 .
1 76 LYS 7 6 7 3 42.9 -0.1 .
1 77 GLY 3 8 7 5 71.4 1.7 >sigma
1 78 VAL 5 10 12 5 41.7 -0.2 .
1 79 LYS 7 11 17 5 29.4 -1.0 .
1 80 ILE 6 22 35 14 40.0 -0.3 .
1 81 ASP 4 16 15 10 66.7 1.4 >sigma
1 82 LYS 7 11 28 7 25.0 -1.3 >sigma
1 83 THR 4 15 16 8 50.0 0.3 .
1 84 ASP 4 16 19 10 52.6 0.5 .
1 85 TYR 6 28 34 19 55.9 0.7 .
1 86 MET 6 14 12 8 66.7 1.4 >sigma
1 87 VAL 5 32 55 26 47.3 0.2 .
1 88 GLY 3 15 13 10 76.9 2.1 >sigma
1 89 SER 4 20 17 9 52.9 0.5 .
1 90 TYR 6 36 43 21 48.8 0.3 .
1 91 GLY 3 12 14 7 50.0 0.3 .
1 92 PRO 5 15 30 10 33.3 -0.7 .
1 93 ARG 7 5 9 2 22.2 -1.4 >sigma
1 94 ALA 3 3 10 3 30.0 -0.9 .
1 95 GLU 5 6 9 4 44.4 -0.0 .
1 96 GLU 5 18 25 11 44.0 -0.0 .
1 97 TYR 6 28 36 17 47.2 0.2 .
1 98 GLU 5 13 11 6 54.5 0.6 .
1 99 PHE 7 28 50 22 44.0 -0.0 .
1 100 LEU 7 13 34 10 29.4 -1.0 .
1 101 THR 4 18 31 14 45.2 0.0 .
1 102 PRO 5 7 13 5 38.5 -0.4 .
1 103 MET 6 12 20 5 25.0 -1.3 >sigma
1 104 GLU 5 14 11 8 72.7 1.8 >sigma
1 105 GLU 5 18 12 7 58.3 0.9 .
1 106 ALA 3 23 30 16 53.3 0.6 .
1 107 PRO 5 10 22 7 31.8 -0.8 .
1 108 LYS 7 17 23 13 56.5 0.8 .
1 109 GLY 3 9 12 6 50.0 0.3 .
1 110 MET 6 6 11 2 18.2 -1.7 >sigma
1 111 LEU 7 6 11 3 27.3 -1.1 >sigma
1 112 ALA 3 12 22 8 36.4 -0.5 .
1 113 ARG 7 16 28 10 35.7 -0.6 .
1 114 GLY 3 13 14 8 57.1 0.8 .
1 115 SER 4 17 17 11 64.7 1.3 >sigma
1 116 TYR 6 43 46 28 60.9 1.0 >sigma
1 117 ASN 6 19 18 8 44.4 -0.0 .
1 118 ILE 6 49 47 33 70.2 1.6 >sigma
1 119 LYS 7 16 33 9 27.3 -1.1 >sigma
1 120 SER 4 18 24 11 45.8 0.1 .
1 121 ARG 7 17 26 9 34.6 -0.6 .
1 122 PHE 7 35 59 22 37.3 -0.5 .
1 123 THR 4 28 24 17 70.8 1.7 >sigma
1 124 ASP 4 27 18 14 77.8 2.1 >sigma
1 125 ASP 4 14 11 8 72.7 1.8 >sigma
1 126 ASP 4 11 9 6 66.7 1.4 >sigma
1 127 ARG 7 10 10 6 60.0 1.0 .
1 128 THR 4 13 12 7 58.3 0.9 .
1 129 ASP 4 11 7 6 85.7 2.6 >sigma
1 130 HIS 6 18 27 11 40.7 -0.3 .
1 131 LEU 7 27 43 16 37.2 -0.5 .
1 132 SER 4 18 17 12 70.6 1.7 >sigma
1 133 TRP 10 52 72 32 44.4 -0.0 .
1 134 GLU 5 15 20 8 40.0 -0.3 .
1 135 TRP 10 47 61 25 41.0 -0.2 .
1 136 ASN 6 23 26 16 61.5 1.1 >sigma
1 137 LEU 7 37 59 22 37.3 -0.5 .
1 138 THR 4 33 31 17 54.8 0.7 .
1 139 ILE 6 46 57 28 49.1 0.3 .
1 140 LYS 7 20 35 12 34.3 -0.7 .
1 141 LYS 7 10 15 5 33.3 -0.7 .
1 142 GLU 5 15 24 7 29.2 -1.0 .
1 143 TRP 10 41 63 23 36.5 -0.5 .
1 144 LYS 7 7 16 5 31.3 -0.9 .
1 145 ASP 4 3 7 1 14.3 -1.9 >sigma
stop_
save_
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