NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
446997 2kob 16498 cing 4-filtered-FRED Wattos check stereo assignment distance


data_2kob


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        70
    _Stereo_assign_list.Swap_count           0
    _Stereo_assign_list.Swap_percentage      0.0
    _Stereo_assign_list.Deassign_count       0
    _Stereo_assign_list.Deassign_percentage  0.0
    _Stereo_assign_list.Model_count          20
    _Stereo_assign_list.Total_e_low_states   0.028
    _Stereo_assign_list.Total_e_high_states  31.840
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1   7 TRP QB 32 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.000 0 0 
       1  10 LYS QE 17 no 100.0   0.0  0.000  0.001 0.001 10  4 no 0.094 0 0 
       1  10 LYS QG 33 no 100.0   0.0  0.000  0.000 0.000  6  4 no 0.000 0 0 
       1  11 PHE QB 70 no 100.0   0.0  0.000  0.000 0.000  2  2 no 0.000 0 0 
       1  12 LEU QD  9 no   0.0   0.0  0.000  0.001 0.001 16  0 no 0.081 0 0 
       1  15 LYS QD 69 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.022 0 0 
       1  15 LYS QG 68 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  16 GLU QB 44 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  16 GLU QG 31 no 100.0   0.0  0.000  0.002 0.002  6  0 no 0.077 0 0 
       1  18 ASP QB 20 no 100.0   0.0  0.000  0.000 0.000  8  2 no 0.054 0 0 
       1  20 VAL QG  2 no 100.0 100.0  6.534  6.537 0.003 39 12 no 0.098 0 0 
       1  22 VAL QG 30 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.000 0 0 
       1  24 GLN QB 23 no 100.0   0.0  0.000  0.000 0.000  8  4 no 0.028 0 0 
       1  24 GLN QE 45 no 100.0   0.0  0.000  0.000 0.000  4  2 no 0.032 0 0 
       1  24 GLN QG  7 no 100.0   0.0  0.000  0.002 0.002 18  4 no 0.098 0 0 
       1  25 LEU QB 29 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.000 0 0 
       1  25 LEU QD  4 no  45.0  97.3  0.045  0.046 0.001 19  0 no 0.078 0 0 
       1  26 ASN QB 67 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  30 ASN QD 66 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.029 0 0 
       1  35 HIS QB 43 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  36 LEU QD  8 no   0.0   0.0  0.000  0.000 0.000 16  0 no 0.015 0 0 
       1  38 PRO QB 42 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  39 LEU QB 65 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  39 LEU QD  6 no 100.0   0.0  0.000  0.000 0.000 18  4 no 0.031 0 0 
       1  42 LYS QB 41 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  43 SER QB 51 no 100.0   0.0  0.000  0.000 0.000  4  4 no 0.047 0 0 
       1  44 LEU QB 50 no 100.0   0.0  0.000  0.000 0.000  4  4 no 0.000 0 0 
       1  44 LEU QD  3 no 100.0   0.0  0.000  0.000 0.000 26  4 no 0.055 0 0 
       1  46 GLU QG 49 no 100.0   0.0  0.000  0.000 0.000  4  4 no 0.047 0 0 
       1  47 ILE QG 28 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.009 0 0 
       1  48 LEU QB 22 no 100.0   0.0  0.000  0.000 0.000  8  4 no 0.010 0 0 
       1  48 LEU QD 11 no 100.0   0.0  0.000  0.000 0.000 14  4 no 0.059 0 0 
       1  49 PRO QD 64 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  51 ASP QB 48 no 100.0   0.0  0.000  0.000 0.000  4  4 no 0.031 0 0 
       1  53 GLN QE 40 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.013 0 0 
       1  56 ILE QG 27 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.000 0 0 
       1  58 GLU QB 63 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  60 LYS QG 62 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.003 0 0 
       1  61 LEU QB 61 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  61 LEU QD 19 no 100.0   0.0  0.000  0.000 0.000  8  0 no 0.000 0 0 
       1  63 LYS QG 60 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  66 LEU QB 59 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  66 LEU QD 14 no 100.0   0.0  0.000  0.000 0.000 10  0 no 0.031 0 0 
       1  67 LYS QB 58 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  67 LYS QE 57 no 100.0   0.0  0.000  0.001 0.001  2  0 no 0.085 0 0 
       1  67 LYS QG 39 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  69 ILE QG 26 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.000 0 0 
       1  70 ARG QD 47 no 100.0   0.0  0.000  0.005 0.005  4  4 no 0.168 0 0 
       1  71 ASN QB 18 no 100.0   0.0  0.000  0.000 0.000  8  0 no 0.029 0 0 
       1  74 SER QB 38 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  75 GLN QG 56 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.028 0 0 
       1  76 ILE QG 55 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  77 PHE QB 25 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.000 0 0 
       1  78 ARG QG 13 no   0.0   0.0  0.000  0.004 0.004 12  4 no 0.189 0 0 
       1  79 LEU QB 16 no 100.0   0.0  0.000  0.000 0.000 10  4 no 0.000 0 0 
       1  79 LEU QD  1 no 100.0 100.0 25.178 25.179 0.001 40 10 no 0.093 0 0 
       1  81 ILE QG 37 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  82 GLU QB 36 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  82 GLU QG 12 no 100.0   0.0  0.000  0.000 0.000 12  2 no 0.039 0 0 
       1  83 ASN QB 24 no 100.0   0.0  0.000  0.000 0.000  6  0 no 0.000 0 0 
       1  83 ASN QD 15 no  35.0  98.1  0.010  0.010 0.000 10  2 no 0.041 0 0 
       1  88 PHE QB 35 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.000 0 0 
       1  89 ASN QD 10 no  75.0  99.7  0.046  0.046 0.000 15  4 no 0.039 0 0 
       1  90 PRO QB 34 no 100.0   0.0  0.000  0.000 0.000  4  0 no 0.032 0 0 
       1  94 VAL QG  5 no 100.0   0.0  0.000  0.005 0.005 18  4 no 0.168 0 0 
       1  95 ARG QB 54 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  97 PRO QD 53 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1  99 ILE QG 52 no 100.0   0.0  0.000  0.000 0.000  2  0 no 0.000 0 0 
       1 101 LEU QB 46 no 100.0   0.0  0.000  0.000 0.000  4  4 no 0.000 0 0 
       1 101 LEU QD 21 no 100.0   0.0  0.000  0.000 0.000  8  4 no 0.014 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Saturday, May 4, 2024 3:27:13 PM GMT (wattos1)