NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
445037 2kiw 16298 cing 4-filtered-FRED Wattos check stereo assignment distance


data_2kiw


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        48
    _Stereo_assign_list.Swap_count           0
    _Stereo_assign_list.Swap_percentage      0.0
    _Stereo_assign_list.Deassign_count       0
    _Stereo_assign_list.Deassign_percentage  0.0
    _Stereo_assign_list.Model_count          20
    _Stereo_assign_list.Total_e_low_states   0.012
    _Stereo_assign_list.Total_e_high_states  35.139
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1   5 VAL QG  5 no 100.0 100.0  5.141  5.142 0.000 15 0 no 0.027 0 0 
       1   7 ASP QB 44 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1   8 ASP QB 43 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1   9 TRP QB 42 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  10 LEU QB 16 no 100.0   0.0  0.000  0.000 0.000  4 0 no 0.014 0 0 
       1  11 LYS QB 41 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  11 LYS QD 47 no 100.0   0.0  0.000  0.000 0.000  1 0 no 0.000 0 0 
       1  12 GLN QB 40 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  15 ASN QD 39 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.050 0 0 
       1  17 VAL QG  6 no  90.0  99.9  1.315  1.316 0.001 11 0 no 0.138 0 0 
       1  22 VAL QG  4 no  15.0 100.0  0.009  0.009 0.000 15 0 no 0.000 0 0 
       1  26 GLU QB 38 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  30 GLN QG 37 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  34 GLU QG 36 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  35 ARG QB 35 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  39 LYS QB 34 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  41 ILE QG 33 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  42 GLN QG 32 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.006 0 0 
       1  49 TYR QB  9 no 100.0   0.0  0.000  0.000 0.000  8 0 no 0.024 0 0 
       1  50 GLN QE 11 no 100.0   0.0  0.000  0.000 0.000  6 2 no 0.071 0 0 
       1  52 PHE QB 31 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  53 VAL QG  2 no 100.0  99.9  1.729  1.730 0.001 21 4 no 0.089 0 0 
       1  55 ASP QB 15 no 100.0   0.0  0.000  0.000 0.000  4 0 no 0.000 0 0 
       1  57 SER QB 46 no 100.0   0.0  0.000  0.000 0.000  1 0 no 0.000 0 0 
       1  61 SER QB 14 no 100.0   0.0  0.000  0.000 0.000  4 0 no 0.000 0 0 
       1  64 TYR QB 30 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  65 VAL QG  1 no 100.0 100.0 17.218 17.218 0.000 24 0 no 0.065 0 0 
       1  68 ILE QG 29 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  69 VAL QG  3 no 100.0 100.0  7.752  7.752 0.000 16 3 no 0.053 0 0 
       1  71 SER QB 21 no  15.0 100.0  0.010  0.010 0.000  3 0 no 0.000 0 0 
       1  73 ASN QD 48 no  30.0 100.0  0.080  0.080 0.000  1 1 no 0.000 0 0 
       1  74 MET QB 45 no 100.0 100.0  0.000  0.000 0.000  1 0 no 0.047 0 0 
       1  74 MET QG 28 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  77 LYS QB 27 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  77 LYS QD 26 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.092 0 0 
       1  78 TYR QB  7 no 100.0   0.0  0.000  0.000 0.000 10 0 no 0.000 0 0 
       1  80 TYR QB 25 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1  83 ARG QB 20 no 100.0   0.0  0.000  0.000 0.000  4 4 no 0.000 0 0 
       1  83 ARG QD 19 no 100.0   0.0  0.000  0.000 0.000  4 4 no 0.000 0 0 
       1  84 LEU QB 10 no 100.0   0.0  0.000  0.000 0.000  6 2 no 0.000 0 0 
       1  84 LEU QD  8 no 100.0  99.6  1.872  1.880 0.007  9 2 no 0.301 0 0 
       1  85 ILE QG 13 no 100.0   0.0  0.000  0.000 0.000  4 0 no 0.000 0 0 
       1  91 GLU QG 24 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.029 0 0 
       1  94 LYS QG 23 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.033 0 0 
       1  95 ARG QG 12 no 100.0   0.0  0.000  0.000 0.000  4 0 no 0.067 0 0 
       1  98 LYS QB 22 no 100.0   0.0  0.000  0.000 0.000  2 0 no 0.000 0 0 
       1 104 LEU QB 18 no 100.0   0.0  0.000  0.000 0.000  4 4 no 0.000 0 0 
       1 104 LEU QD 17 no 100.0   0.0  0.000  0.000 0.000  4 4 no 0.000 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Saturday, April 27, 2024 1:46:21 PM GMT (wattos1)