NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | cing | stage | program | type | subtype | subsubtype |
435914 | 2jzt | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2jzt save_NOE_Completeness _NOE_completeness_stats.Sf_category NOE_completeness_statistics _NOE_completeness_stats.Model_count 20 _NOE_completeness_stats.Residue_count 142 _NOE_completeness_stats.Total_atom_count 2256 _NOE_completeness_stats.Observable_atom_definition ob_standard _NOE_completeness_stats.Observable_atom_count 793 _NOE_completeness_stats.Use_intra_residue_restraints no _NOE_completeness_stats.Redundancy_threshold_pct 5.0 _NOE_completeness_stats.Distance_averaging_power 1.00 _NOE_completeness_stats.Completeness_cutoff 4.00 _NOE_completeness_stats.Completeness_cumulative_pct 43.9 _NOE_completeness_stats.Constraint_unexpanded_count 1523 _NOE_completeness_stats.Constraint_count 1523 _NOE_completeness_stats.Constraint_exp_unfiltered_count 1654 _NOE_completeness_stats.Constraint_exceptional_count 0 _NOE_completeness_stats.Constraint_nonobservable_count 0 _NOE_completeness_stats.Constraint_intraresidue_count 391 _NOE_completeness_stats.Constraint_surplus_count 116 _NOE_completeness_stats.Constraint_observed_count 1016 _NOE_completeness_stats.Constraint_expected_count 1560 _NOE_completeness_stats.Constraint_matched_count 685 _NOE_completeness_stats.Constraint_unmatched_count 331 _NOE_completeness_stats.Constraint_exp_nonobs_count 875 _NOE_completeness_stats.Details ; A detailed methodology description is available at: http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html Please note that the contributions in ambiguous restraints are considered separate 'restraints' for the sets defined below. The cut off for all statistics except those in the by-shell table is given below by the above tag: _NOE_completeness_stats.Completeness_cutoff Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * Number of models * 5 * Number of residues * 6 * Number of atoms * 7 * Standard set name of observable atom definitions see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999). * 8 * Observable atom(group)s * 9 * Include intra residue restraints * 10 * Surplus threshold for determining redundant restraints * 11 * Power for averaging the distance over models * 12 * Up to what distance are NOEs expected * 13 * Cumulative completeness percentage * 14 * Number of unexpanded restraints in restraint list. * 15 * Number of restraints in restraint list. Set U * 16 * Expected restraints based on criteria in list. Set V Set V differs from set B only if intra residue restraints are analyzed. * 17 * Exceptional restraints, i.e. with an unknown atom.Set E * 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O Even though restraints with these atom types might have been observed they are excluded from the analysis. * 19 * Intra-residue restraints if not to be analyzed. Set I * 20 * Surplus like double restraints. Set S * 21 * Observed restraints. Set A = U - (E u O u I u S) * 22 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 23 * Observed restraints matched to the expected. Set M = A n B * 24 * Observed restraints that were not expected. Set C = A - M * 25 * Expected restraints that were not observed. Set D = B - M * 26 * This tag Description of the tags in the class table: * 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts. Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular. * 2 * Observed restraints. Set A = U - (E u O u I u S) * 3 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 4 * Observed restraints matched to the expected. Set M = A n B * 5 * Completeness percentage * 6 * Standard deviation from the average over the classes. * 7 * Extra information * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the shell table. The first row shows the lower limit of the shells requested and The last row shows the total number of restraints over the shells. * 1 * Description of the content of the row: edges, shell, or sums. The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others. * 2 * Lower limit of shell of expected restraints. * 3 * Upper limit of shell of expected restraints. * 4 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 5 * Observed restraints matched to the expected. Set M = A n B * 6 * Matched restraints with experimental distance in shell 1 * 7 * Matched restraints with experimental distance in shell 2 * 8 * Matched restraints with experimental distance in shell 3 * 9 * Matched restraints with experimental distance in shell 4 * 10 * Matched restraints with experimental distance in shell 5 * 11 * Matched restraints with experimental distance in shell 6 * 12 * Matched restraints with experimental distance in shell 7 * 13 * Matched restraints with experimental distance in shell 8 * 14 * Matched restraints with experimental distance in shell 9 * 15 * Matched restraints overflowing the last shell * 16 * Completeness percentage for this shell * 17 * Completeness percentage up to upper limit of this shell * 18 * Administrative tag * 19 * Administrative tag Description of the tags in the residue table: * 1 * Chain identifier * 2 * Residue number * 3 * Residue name * 4 * Observable atom(group)s for this residue. * 5 * Observed restraints. Set A = U - (E u O u I u S) * 6 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 7 * Observed restraints matched to the expected. Set M = A n B * 8 * Completeness percentage * 9 * Standard deviation from the average over the residues. * 10 * Extra information * 11 * Administrative tag * 12 * Administrative tag ; loop_ _NOE_completeness_class.Type _NOE_completeness_class.Constraint_observed_count _NOE_completeness_class.Constraint_expected_count _NOE_completeness_class.Constraint_matched_count _NOE_completeness_class.Completeness_cumulative_pct _NOE_completeness_class.Std_dev _NOE_completeness_class.Details intraresidue 0 0 0 . . "no intras" sequential 372 629 265 42.1 -0.2 . medium-range 185 312 122 39.1 -0.8 . long-range 459 619 298 48.1 1.0 . intermolecular 0 0 0 . . "no multimer" stop_ loop_ _NOE_completeness_shell.Type _NOE_completeness_shell.Shell_start _NOE_completeness_shell.Shell_end _NOE_completeness_shell.Constraint_expected_count _NOE_completeness_shell.Constraint_matched_count _NOE_completeness_shell.Matched_shell_1 _NOE_completeness_shell.Matched_shell_2 _NOE_completeness_shell.Matched_shell_3 _NOE_completeness_shell.Matched_shell_4 _NOE_completeness_shell.Matched_shell_5 _NOE_completeness_shell.Matched_shell_6 _NOE_completeness_shell.Matched_shell_7 _NOE_completeness_shell.Matched_shell_8 _NOE_completeness_shell.Matched_shell_9 _NOE_completeness_shell.Matched_shell_overflow _NOE_completeness_shell.Completeness_shell_pct _NOE_completeness_shell.Completeness_cumulative_pct edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . . shell 0.00 2.00 9 4 0 0 0 1 0 1 0 1 . 1 44.4 44.4 shell 2.00 2.50 128 90 0 24 13 8 4 5 11 11 . 14 70.3 68.6 shell 2.50 3.00 295 188 0 7 49 34 14 13 11 14 . 46 63.7 65.3 shell 3.00 3.50 418 189 0 1 10 22 27 18 16 28 . 67 45.2 55.4 shell 3.50 4.00 710 214 0 0 1 27 27 22 33 38 . 66 30.1 43.9 shell 4.00 4.50 1005 162 0 0 0 0 11 41 19 28 . 63 16.1 33.0 shell 4.50 5.00 1540 102 0 0 0 0 0 4 14 22 . 62 6.6 23.1 shell 5.00 5.50 2023 44 0 0 0 0 0 0 4 17 . 23 2.2 16.2 shell 5.50 6.00 2164 16 0 0 0 0 0 0 0 5 . 11 0.7 12.2 shell 6.00 6.50 2448 7 0 0 0 0 0 0 0 0 . 7 0.3 9.5 shell 6.50 7.00 2736 0 0 0 0 0 0 0 0 0 . 0 0.0 7.5 shell 7.00 7.50 2957 0 0 0 0 0 0 0 0 0 . 0 0.0 6.2 shell 7.50 8.00 3328 0 0 0 0 0 0 0 0 0 . 0 0.0 5.1 shell 8.00 8.50 3527 0 0 0 0 0 0 0 0 0 . 0 0.0 4.4 shell 8.50 9.00 3717 0 0 0 0 0 0 0 0 0 . 0 0.0 3.8 sums . . 27005 1016 0 32 73 92 83 104 108 164 . 360 . . stop_ loop_ _NOE_completeness_comp.Entity_assembly_ID _NOE_completeness_comp.Comp_index_ID _NOE_completeness_comp.Comp_ID _NOE_completeness_comp.Obs_atom_count _NOE_completeness_comp.Constraint_observed_count _NOE_completeness_comp.Constraint_expected_count _NOE_completeness_comp.Constraint_matched_count _NOE_completeness_comp.Completeness_cumulative_pct _NOE_completeness_comp.Std_dev _NOE_completeness_comp.Details 1 1 MET 6 0 4 0 0.0 -1.2 >sigma 1 2 ALA 3 0 7 0 0.0 -1.2 >sigma 1 3 ASN 6 0 7 0 0.0 -1.2 >sigma 1 4 ASP 4 0 8 0 0.0 -1.2 >sigma 1 5 THR 4 0 9 0 0.0 -1.2 >sigma 1 6 PRO 5 0 9 0 0.0 -1.2 >sigma 1 7 PHE 7 0 9 0 0.0 -1.2 >sigma 1 8 SER 4 0 12 0 0.0 -1.2 >sigma 1 9 ALA 3 0 11 0 0.0 -1.2 >sigma 1 10 LEU 7 0 11 0 0.0 -1.2 >sigma 1 11 TRP 10 30 38 21 55.3 0.8 . 1 12 GLN 7 17 23 13 56.5 0.8 . 1 13 ARG 7 7 18 6 33.3 -0.0 . 1 14 LEU 7 13 34 8 23.5 -0.4 . 1 15 LEU 7 24 39 18 46.2 0.5 . 1 16 THR 4 9 14 7 50.0 0.6 . 1 17 ARG 7 3 20 2 10.0 -0.9 . 1 18 GLY 3 0 9 0 0.0 -1.2 >sigma 1 19 TRP 10 38 57 26 45.6 0.4 . 1 20 GLN 7 13 20 9 45.0 0.4 . 1 21 PRO 5 22 26 17 65.4 1.2 >sigma 1 22 VAL 5 41 45 27 60.0 1.0 . 1 23 GLU 5 25 33 20 60.6 1.0 . 1 24 ALA 3 21 29 18 62.1 1.0 >sigma 1 25 SER 4 1 11 0 0.0 -1.2 >sigma 1 26 THR 4 10 27 9 33.3 -0.0 . 1 27 VAL 5 43 61 30 49.2 0.6 . 1 28 ASP 4 12 18 12 66.7 1.2 >sigma 1 29 ASP 4 16 18 13 72.2 1.4 >sigma 1 30 TRP 10 48 61 35 57.4 0.9 . 1 31 ILE 6 46 50 33 66.0 1.2 >sigma 1 32 LYS 7 18 23 13 56.5 0.8 . 1 33 ARG 7 14 24 12 50.0 0.6 . 1 34 VAL 5 40 43 29 67.4 1.2 >sigma 1 35 GLY 3 15 19 13 68.4 1.3 >sigma 1 36 ASP 4 20 21 10 47.6 0.5 . 1 37 GLY 3 27 22 16 72.7 1.4 >sigma 1 38 VAL 5 38 49 31 63.3 1.1 >sigma 1 39 ILE 6 49 61 33 54.1 0.8 . 1 40 LEU 7 45 50 29 58.0 0.9 . 1 41 LEU 7 34 47 24 51.1 0.6 . 1 42 SER 4 12 16 6 37.5 0.1 . 1 43 SER 4 0 9 0 0.0 -1.2 >sigma 1 44 ASP 4 0 10 0 0.0 -1.2 >sigma 1 45 PRO 5 0 8 0 0.0 -1.2 >sigma 1 46 ARG 7 0 8 0 0.0 -1.2 >sigma 1 47 ARG 7 0 10 0 0.0 -1.2 >sigma 1 48 THR 4 0 9 0 0.0 -1.2 >sigma 1 49 PRO 5 0 9 0 0.0 -1.2 >sigma 1 50 GLU 5 0 10 0 0.0 -1.2 >sigma 1 51 VAL 5 0 10 0 0.0 -1.2 >sigma 1 52 SER 4 0 9 0 0.0 -1.2 >sigma 1 53 ASP 4 0 8 0 0.0 -1.2 >sigma 1 54 ASN 6 0 11 0 0.0 -1.2 >sigma 1 55 PRO 5 17 24 10 41.7 0.3 . 1 56 VAL 5 10 16 5 31.3 -0.1 . 1 57 MET 6 10 15 7 46.7 0.5 . 1 58 ILE 6 31 44 19 43.2 0.3 . 1 59 ALA 3 21 21 11 52.4 0.7 . 1 60 GLU 5 11 20 9 45.0 0.4 . 1 61 LEU 7 37 51 24 47.1 0.5 . 1 62 LEU 7 34 34 19 55.9 0.8 . 1 63 ARG 7 11 14 7 50.0 0.6 . 1 64 GLU 5 17 19 9 47.4 0.5 . 1 65 PHE 7 20 44 13 29.5 -0.2 . 1 66 PRO 5 1 7 1 14.3 -0.7 . 1 67 GLN 7 9 17 9 52.9 0.7 . 1 68 PHE 7 23 33 15 45.5 0.4 . 1 69 ASP 4 8 5 3 60.0 1.0 . 1 70 TRP 10 54 50 28 56.0 0.8 . 1 71 GLN 7 33 25 20 80.0 1.7 >sigma 1 72 VAL 5 38 38 21 55.3 0.8 . 1 73 ALA 3 31 35 22 62.9 1.1 >sigma 1 74 VAL 5 42 49 33 67.3 1.2 >sigma 1 75 ALA 3 26 29 18 62.1 1.0 >sigma 1 76 ASP 4 7 13 3 23.1 -0.4 . 1 77 LEU 7 10 13 4 30.8 -0.1 . 1 78 GLU 5 11 12 8 66.7 1.2 >sigma 1 79 GLN 7 16 39 16 41.0 0.3 . 1 80 SER 4 20 31 12 38.7 0.2 . 1 81 GLU 5 5 13 4 30.8 -0.1 . 1 82 ALA 3 14 19 8 42.1 0.3 . 1 83 ILE 6 35 63 26 41.3 0.3 . 1 84 GLY 3 21 23 15 65.2 1.2 >sigma 1 85 ASP 4 12 13 8 61.5 1.0 >sigma 1 86 ARG 7 13 20 11 55.0 0.8 . 1 87 PHE 7 37 46 22 47.8 0.5 . 1 88 ASN 6 12 10 6 60.0 1.0 . 1 89 VAL 5 32 29 17 58.6 0.9 . 1 90 ARG 7 0 10 0 0.0 -1.2 >sigma 1 91 ARG 7 0 10 0 0.0 -1.2 >sigma 1 92 PHE 7 0 10 0 0.0 -1.2 >sigma 1 93 PRO 5 2 16 2 12.5 -0.8 . 1 94 ALA 3 23 22 12 54.5 0.8 . 1 95 THR 4 32 32 18 56.3 0.8 . 1 96 LEU 7 37 60 24 40.0 0.2 . 1 97 VAL 5 29 44 16 36.4 0.1 . 1 98 PHE 7 43 60 28 46.7 0.5 . 1 99 THR 4 23 30 17 56.7 0.8 . 1 100 ASP 4 13 7 7 100.0 2.5 >sigma 1 101 GLY 3 15 16 11 68.8 1.3 >sigma 1 102 LYS 7 12 12 8 66.7 1.2 >sigma 1 103 LEU 7 30 39 23 59.0 0.9 . 1 104 ARG 7 20 28 14 50.0 0.6 . 1 105 GLY 3 19 18 14 77.8 1.6 >sigma 1 106 ALA 3 20 16 15 93.8 2.2 >sigma 1 107 LEU 7 25 33 13 39.4 0.2 . 1 108 SER 4 0 10 0 0.0 -1.2 >sigma 1 109 GLY 3 0 4 0 0.0 -1.2 >sigma 1 110 ILE 6 0 7 0 0.0 -1.2 >sigma 1 111 HIS 6 0 9 0 0.0 -1.2 >sigma 1 112 PRO 5 0 7 0 0.0 -1.2 >sigma 1 113 TRP 10 27 31 14 45.2 0.4 . 1 114 ALA 3 9 15 7 46.7 0.5 . 1 115 GLU 5 9 13 7 53.8 0.7 . 1 116 LEU 7 21 43 14 32.6 -0.0 . 1 117 LEU 7 16 25 9 36.0 0.1 . 1 118 THR 4 11 16 8 50.0 0.6 . 1 119 LEU 7 13 21 8 38.1 0.2 . 1 120 MET 6 20 41 15 36.6 0.1 . 1 121 ARG 7 15 22 11 50.0 0.6 . 1 122 SER 4 6 15 4 26.7 -0.3 . 1 123 ILE 6 23 38 18 47.4 0.5 . 1 124 VAL 5 22 40 15 37.5 0.1 . 1 125 ASP 4 8 12 6 50.0 0.6 . 1 126 THR 4 6 11 6 54.5 0.8 . 1 127 PRO 5 3 9 3 33.3 -0.0 . 1 128 ALA 3 0 8 0 0.0 -1.2 >sigma 1 129 ALA 3 0 7 0 0.0 -1.2 >sigma 1 130 GLN 7 0 8 0 0.0 -1.2 >sigma 1 131 GLU 5 0 9 0 0.0 -1.2 >sigma 1 132 THR 4 0 8 0 0.0 -1.2 >sigma 1 133 VAL 5 0 9 0 0.0 -1.2 >sigma 1 134 GLN 7 0 10 0 0.0 -1.2 >sigma 1 135 LEU 7 0 8 0 0.0 -1.2 >sigma 1 136 GLU 5 0 7 0 0.0 -1.2 >sigma 1 137 HIS 6 0 7 0 0.0 -1.2 >sigma 1 138 HIS 6 0 6 0 0.0 -1.2 >sigma 1 139 HIS 6 0 6 0 0.0 -1.2 >sigma 1 140 HIS 6 0 6 0 0.0 -1.2 >sigma 1 141 HIS 6 0 7 0 0.0 -1.2 >sigma 1 142 HIS 6 0 4 0 0.0 -1.2 >sigma stop_ save_
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