NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | cing | stage | program | type | subtype | subsubtype |
|
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406920 |
1xwn   |
cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1xwn
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 20
_NOE_completeness_stats.Residue_count 174
_NOE_completeness_stats.Total_atom_count 2548
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 892
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 47.9
_NOE_completeness_stats.Constraint_unexpanded_count 1876
_NOE_completeness_stats.Constraint_count 2005
_NOE_completeness_stats.Constraint_exp_unfiltered_count 2003
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 237
_NOE_completeness_stats.Constraint_intraresidue_count 257
_NOE_completeness_stats.Constraint_surplus_count 144
_NOE_completeness_stats.Constraint_observed_count 1367
_NOE_completeness_stats.Constraint_expected_count 1882
_NOE_completeness_stats.Constraint_matched_count 901
_NOE_completeness_stats.Constraint_unmatched_count 466
_NOE_completeness_stats.Constraint_exp_nonobs_count 981
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 480 676 383 56.7 1.0 .
medium-range 277 314 148 47.1 -0.1 .
long-range 610 892 370 41.5 -0.8 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 9 5 0 0 0 1 3 1 0 0 . 0 55.6 55.6
shell 2.00 2.50 176 143 0 0 47 31 27 22 16 0 . 0 81.3 80.0
shell 2.50 3.00 313 216 0 0 12 23 65 47 55 2 . 12 69.0 73.1
shell 3.00 3.50 530 254 0 0 0 3 34 71 111 8 . 27 47.9 60.1
shell 3.50 4.00 854 283 0 0 0 5 29 62 135 11 . 41 33.1 47.9
shell 4.00 4.50 1367 252 0 0 0 0 4 35 141 19 . 53 18.4 35.5
shell 4.50 5.00 1961 139 0 0 0 0 1 10 73 13 . 42 7.1 24.8
shell 5.00 5.50 2416 52 0 0 0 0 0 0 21 5 . 26 2.2 17.6
shell 5.50 6.00 2788 16 0 0 0 0 0 0 3 1 . 12 0.6 13.1
shell 6.00 6.50 3119 7 0 0 0 0 0 0 2 1 . 4 0.2 10.1
shell 6.50 7.00 3482 0 0 0 0 0 0 0 0 0 . 0 0.0 8.0
shell 7.00 7.50 3736 0 0 0 0 0 0 0 0 0 . 0 0.0 6.6
shell 7.50 8.00 4091 0 0 0 0 0 0 0 0 0 . 0 0.0 5.5
shell 8.00 8.50 4546 0 0 0 0 0 0 0 0 0 . 0 0.0 4.7
shell 8.50 9.00 4894 0 0 0 0 0 0 0 0 0 . 0 0.0 4.0
sums . . 34282 1367 0 0 59 63 163 248 557 60 . 217 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 0 4 0 0.0 -2.4 >sigma
1 2 ALA 3 0 8 0 0.0 -2.4 >sigma
1 3 ALA 3 0 9 0 0.0 -2.4 >sigma
1 4 ILE 6 0 9 0 0.0 -2.4 >sigma
1 5 PRO 5 0 11 0 0.0 -2.4 >sigma
1 6 PRO 5 0 8 0 0.0 -2.4 >sigma
1 7 ASP 4 0 6 0 0.0 -2.4 >sigma
1 8 SER 4 0 7 0 0.0 -2.4 >sigma
1 9 TRP 10 0 8 0 0.0 -2.4 >sigma
1 10 GLN 7 0 9 0 0.0 -2.4 >sigma
1 11 PRO 5 0 11 0 0.0 -2.4 >sigma
1 12 PRO 5 5 14 3 21.4 -1.4 >sigma
1 13 ASN 6 20 24 13 54.2 0.2 .
1 14 VAL 5 25 30 15 50.0 0.0 .
1 15 TYR 6 21 28 11 39.3 -0.5 .
1 16 LEU 7 33 42 20 47.6 -0.1 .
1 17 GLU 5 29 29 18 62.1 0.6 .
1 18 THR 4 29 33 20 60.6 0.6 .
1 19 SER 4 16 28 15 53.6 0.2 .
1 20 MET 6 22 49 17 34.7 -0.7 .
1 21 GLY 3 12 13 10 76.9 1.4 >sigma
1 22 ILE 6 21 25 13 52.0 0.1 .
1 23 ILE 6 32 53 21 39.6 -0.5 .
1 24 VAL 5 20 32 13 40.6 -0.4 .
1 25 LEU 7 26 36 13 36.1 -0.6 .
1 26 GLU 5 10 22 8 36.4 -0.6 .
1 27 LEU 7 19 32 13 40.6 -0.4 .
1 28 TYR 6 23 32 12 37.5 -0.6 .
1 29 TRP 10 16 18 5 27.8 -1.0 >sigma
1 30 LYS 7 12 21 6 28.6 -1.0 >sigma
1 31 HIS 6 11 16 5 31.3 -0.9 .
1 32 ALA 3 9 29 7 24.1 -1.2 >sigma
1 33 PRO 5 9 25 7 28.0 -1.0 >sigma
1 34 LYS 7 15 18 10 55.6 0.3 .
1 35 THR 4 21 27 17 63.0 0.7 .
1 36 CYS 4 20 22 14 63.6 0.7 .
1 37 LYS 7 16 17 10 58.8 0.5 .
1 38 ASN 6 23 32 18 56.3 0.3 .
1 39 PHE 7 32 43 20 46.5 -0.1 .
1 40 ALA 3 17 18 11 61.1 0.6 .
1 41 GLU 5 19 26 15 57.7 0.4 .
1 42 LEU 7 35 45 23 51.1 0.1 .
1 43 ALA 3 21 25 15 60.0 0.5 .
1 44 ARG 7 14 12 10 83.3 1.7 >sigma
1 45 ARG 7 13 20 10 50.0 0.0 .
1 46 GLY 3 8 14 7 50.0 0.0 .
1 47 TYR 6 14 23 9 39.1 -0.5 .
1 48 TYR 6 30 41 23 56.1 0.3 .
1 49 ASN 6 9 18 8 44.4 -0.2 .
1 50 GLY 3 11 9 7 77.8 1.4 >sigma
1 51 THR 4 19 13 10 76.9 1.4 >sigma
1 52 LYS 7 12 25 9 36.0 -0.6 .
1 53 PHE 7 25 47 17 36.2 -0.6 .
1 54 HIS 6 13 9 6 66.7 0.9 .
1 55 ARG 7 21 23 12 52.2 0.1 .
1 56 ILE 6 28 59 16 27.1 -1.1 >sigma
1 57 ILE 6 23 31 13 41.9 -0.4 .
1 58 LYS 7 11 22 6 27.3 -1.1 >sigma
1 59 ASP 4 9 13 7 53.8 0.2 .
1 60 PHE 7 24 37 21 56.8 0.4 .
1 61 MET 6 29 51 25 49.0 -0.0 .
1 62 ILE 6 32 55 27 49.1 -0.0 .
1 63 GLN 7 30 30 17 56.7 0.4 .
1 64 GLY 3 16 17 10 58.8 0.5 .
1 65 GLY 3 13 11 5 45.5 -0.2 .
1 66 ASP 4 8 7 3 42.9 -0.3 .
1 67 PRO 5 4 11 3 27.3 -1.1 >sigma
1 68 THR 4 12 10 7 70.0 1.0 >sigma
1 69 GLY 3 6 7 5 71.4 1.1 >sigma
1 70 THR 4 15 9 6 66.7 0.9 .
1 71 GLY 3 6 8 4 50.0 0.0 .
1 72 ARG 7 4 9 2 22.2 -1.3 >sigma
1 73 GLY 3 4 8 2 25.0 -1.2 >sigma
1 74 GLY 3 9 5 4 80.0 1.5 >sigma
1 75 ALA 3 13 8 7 87.5 1.9 >sigma
1 76 SER 4 9 15 6 40.0 -0.4 .
1 77 ILE 6 19 33 15 45.5 -0.2 .
1 78 TYR 6 16 27 12 44.4 -0.2 .
1 79 GLY 3 8 9 7 77.8 1.4 >sigma
1 80 LYS 7 12 15 10 66.7 0.9 .
1 81 GLN 7 14 22 12 54.5 0.3 .
1 82 PHE 7 14 22 11 50.0 0.0 .
1 83 GLU 5 13 12 11 91.7 2.1 >sigma
1 84 ASP 4 14 13 9 69.2 1.0 .
1 85 GLU 5 9 8 5 62.5 0.7 .
1 86 LEU 7 17 12 9 75.0 1.3 >sigma
1 87 HIS 6 7 9 4 44.4 -0.2 .
1 88 PRO 5 1 7 1 14.3 -1.7 >sigma
1 89 ASP 4 3 7 3 42.9 -0.3 .
1 90 LEU 7 26 24 13 54.2 0.2 .
1 91 LYS 7 11 15 7 46.7 -0.1 .
1 92 PHE 7 27 35 13 37.1 -0.6 .
1 93 THR 4 20 16 10 62.5 0.7 .
1 94 GLY 3 12 14 9 64.3 0.7 .
1 95 ALA 3 11 13 7 53.8 0.2 .
1 96 GLY 3 18 24 14 58.3 0.4 .
1 97 ILE 6 40 47 26 55.3 0.3 .
1 98 LEU 7 34 53 21 39.6 -0.5 .
1 99 ALA 3 29 30 16 53.3 0.2 .
1 100 MET 6 20 37 13 35.1 -0.7 .
1 101 ALA 3 19 24 15 62.5 0.7 .
1 102 ASN 6 11 15 9 60.0 0.5 .
1 103 ALA 3 8 11 6 54.5 0.3 .
1 104 GLY 3 12 11 8 72.7 1.1 >sigma
1 105 PRO 5 7 6 5 83.3 1.7 >sigma
1 106 ASP 4 18 10 9 90.0 2.0 >sigma
1 107 THR 4 22 21 15 71.4 1.1 >sigma
1 108 ASN 6 30 29 20 69.0 1.0 .
1 109 GLY 3 10 11 6 54.5 0.3 .
1 110 SER 4 12 11 7 63.6 0.7 .
1 111 GLN 7 16 18 8 44.4 -0.2 .
1 112 PHE 7 23 31 14 45.2 -0.2 .
1 113 PHE 7 36 51 27 52.9 0.2 .
1 114 VAL 5 27 42 19 45.2 -0.2 .
1 115 THR 4 26 33 18 54.5 0.3 .
1 116 LEU 7 21 38 18 47.4 -0.1 .
1 117 ALA 3 14 21 11 52.4 0.2 .
1 118 PRO 5 6 9 4 44.4 -0.2 .
1 119 THR 4 23 31 16 51.6 0.1 .
1 120 GLN 7 10 13 7 53.8 0.2 .
1 121 TRP 10 12 26 8 30.8 -0.9 .
1 122 LEU 7 29 42 20 47.6 -0.1 .
1 123 ASP 4 19 14 10 71.4 1.1 >sigma
1 124 GLY 3 11 6 6 100.0 2.5 >sigma
1 125 LYS 7 13 17 11 64.7 0.8 .
1 126 HIS 6 22 23 13 56.5 0.4 .
1 127 THR 4 15 17 6 35.3 -0.7 .
1 128 ILE 6 28 47 18 38.3 -0.5 .
1 129 PHE 7 26 69 18 26.1 -1.1 >sigma
1 130 GLY 3 19 25 15 60.0 0.5 .
1 131 ARG 7 19 30 15 50.0 0.0 .
1 132 VAL 5 29 49 19 38.8 -0.5 .
1 133 CYS 4 9 8 6 75.0 1.3 >sigma
1 134 GLN 7 15 18 11 61.1 0.6 .
1 135 GLY 3 13 24 11 45.8 -0.2 .
1 136 ILE 6 30 46 21 45.7 -0.2 .
1 137 GLY 3 14 16 10 62.5 0.7 .
1 138 MET 6 31 45 23 51.1 0.1 .
1 139 VAL 5 28 47 20 42.6 -0.3 .
1 140 ASN 6 28 23 18 78.3 1.4 >sigma
1 141 ARG 7 19 24 14 58.3 0.4 .
1 142 VAL 5 33 49 24 49.0 -0.0 .
1 143 GLY 3 19 19 10 52.6 0.2 .
1 144 MET 6 14 13 9 69.2 1.0 .
1 145 VAL 5 31 18 12 66.7 0.9 .
1 146 GLU 5 14 11 8 72.7 1.1 >sigma
1 147 THR 4 24 22 14 63.6 0.7 .
1 148 ASN 6 14 16 7 43.8 -0.3 .
1 149 SER 4 7 5 4 80.0 1.5 >sigma
1 150 GLN 7 12 9 7 77.8 1.4 >sigma
1 151 ASP 4 14 12 7 58.3 0.4 .
1 152 ARG 7 8 17 6 35.3 -0.7 .
1 153 PRO 5 19 29 6 20.7 -1.4 >sigma
1 154 VAL 5 17 15 8 53.3 0.2 .
1 155 ASP 4 11 18 7 38.9 -0.5 .
1 156 ASP 4 8 6 5 83.3 1.7 >sigma
1 157 VAL 5 25 38 14 36.8 -0.6 .
1 158 LYS 7 19 39 15 38.5 -0.5 .
1 159 ILE 6 36 47 26 55.3 0.3 .
1 160 ILE 6 21 37 14 37.8 -0.6 .
1 161 LYS 7 28 38 21 55.3 0.3 .
1 162 ALA 3 23 25 20 80.0 1.5 >sigma
1 163 TYR 6 11 21 7 33.3 -0.8 .
1 164 PRO 5 9 16 9 56.3 0.3 .
1 165 SER 4 8 14 6 42.9 -0.3 .
1 166 GLY 3 1 3 1 33.3 -0.8 .
stop_
save_
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