NMR Restraints Grid
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NMR Restraints Grid |
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Result table
| image | mrblock_id | pdb_id | bmrb_id | cing | in_recoord | stage | program | type | subtype | subsubtype |
|
|
381359 |
1ix5   |
4668 | cing | recoord | 4-filtered-FRED | Wattos | check | completeness | distance |
data_1ix5
save_NOE_Completeness
_NOE_completeness_stats.Sf_category NOE_completeness_statistics
_NOE_completeness_stats.Model_count 10
_NOE_completeness_stats.Residue_count 151
_NOE_completeness_stats.Total_atom_count 2347
_NOE_completeness_stats.Observable_atom_definition ob_standard
_NOE_completeness_stats.Observable_atom_count 800
_NOE_completeness_stats.Use_intra_residue_restraints no
_NOE_completeness_stats.Redundancy_threshold_pct 5.0
_NOE_completeness_stats.Distance_averaging_power 1.00
_NOE_completeness_stats.Completeness_cutoff 4.00
_NOE_completeness_stats.Completeness_cumulative_pct 47.7
_NOE_completeness_stats.Constraint_unexpanded_count 2915
_NOE_completeness_stats.Constraint_count 2915
_NOE_completeness_stats.Constraint_exp_unfiltered_count 3056
_NOE_completeness_stats.Constraint_exceptional_count 0
_NOE_completeness_stats.Constraint_nonobservable_count 0
_NOE_completeness_stats.Constraint_intraresidue_count 363
_NOE_completeness_stats.Constraint_surplus_count 320
_NOE_completeness_stats.Constraint_observed_count 2232
_NOE_completeness_stats.Constraint_expected_count 2782
_NOE_completeness_stats.Constraint_matched_count 1327
_NOE_completeness_stats.Constraint_unmatched_count 905
_NOE_completeness_stats.Constraint_exp_nonobs_count 1455
_NOE_completeness_stats.Details
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html
Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff
Description of the tags in this list:
* 1 * Administrative tag
* 2 * Administrative tag
* 3 * Administrative tag
* 4 * Number of models
* 5 * Number of residues
* 6 * Number of atoms
* 7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
* 8 * Observable atom(group)s
* 9 * Include intra residue restraints
* 10 * Surplus threshold for determining redundant restraints
* 11 * Power for averaging the distance over models
* 12 * Up to what distance are NOEs expected
* 13 * Cumulative completeness percentage
* 14 * Number of unexpanded restraints in restraint list.
* 15 * Number of restraints in restraint list. Set U
* 16 * Expected restraints based on criteria in list. Set V
Set V differs from set B only if intra residue restraints are analyzed.
* 17 * Exceptional restraints, i.e. with an unknown atom.Set E
* 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
* 19 * Intra-residue restraints if not to be analyzed. Set I
* 20 * Surplus like double restraints. Set S
* 21 * Observed restraints. Set A = U - (E u O u I u S)
* 22 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 23 * Observed restraints matched to the expected. Set M = A n B
* 24 * Observed restraints that were not expected. Set C = A - M
* 25 * Expected restraints that were not observed. Set D = B - M
* 26 * This tag
Description of the tags in the class table:
* 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
* 2 * Observed restraints. Set A = U - (E u O u I u S)
* 3 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 4 * Observed restraints matched to the expected. Set M = A n B
* 5 * Completeness percentage
* 6 * Standard deviation from the average over the classes.
* 7 * Extra information
* 8 * Administrative tag
* 9 * Administrative tag
Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
* 1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
* 2 * Lower limit of shell of expected restraints.
* 3 * Upper limit of shell of expected restraints.
* 4 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 5 * Observed restraints matched to the expected. Set M = A n B
* 6 * Matched restraints with experimental distance in shell 1
* 7 * Matched restraints with experimental distance in shell 2
* 8 * Matched restraints with experimental distance in shell 3
* 9 * Matched restraints with experimental distance in shell 4
* 10 * Matched restraints with experimental distance in shell 5
* 11 * Matched restraints with experimental distance in shell 6
* 12 * Matched restraints with experimental distance in shell 7
* 13 * Matched restraints with experimental distance in shell 8
* 14 * Matched restraints with experimental distance in shell 9
* 15 * Matched restraints overflowing the last shell
* 16 * Completeness percentage for this shell
* 17 * Completeness percentage up to upper limit of this shell
* 18 * Administrative tag
* 19 * Administrative tag
Description of the tags in the residue table:
* 1 * Chain identifier
* 2 * Residue number
* 3 * Residue name
* 4 * Observable atom(group)s for this residue.
* 5 * Observed restraints. Set A = U - (E u O u I u S)
* 6 * Expected restraints based on criteria as in A. Set B = V - (I u S)
* 7 * Observed restraints matched to the expected. Set M = A n B
* 8 * Completeness percentage
* 9 * Standard deviation from the average over the residues.
* 10 * Extra information
* 11 * Administrative tag
* 12 * Administrative tag
;
loop_
_NOE_completeness_class.Type
_NOE_completeness_class.Constraint_observed_count
_NOE_completeness_class.Constraint_expected_count
_NOE_completeness_class.Constraint_matched_count
_NOE_completeness_class.Completeness_cumulative_pct
_NOE_completeness_class.Std_dev
_NOE_completeness_class.Details
intraresidue 0 0 0 . . "no intras"
sequential 636 680 400 58.8 1.0 >sigma
medium-range 478 582 260 44.7 -0.5 .
long-range 1118 1520 667 43.9 -0.6 .
intermolecular 0 0 0 . . "no multimer"
stop_
loop_
_NOE_completeness_shell.Type
_NOE_completeness_shell.Shell_start
_NOE_completeness_shell.Shell_end
_NOE_completeness_shell.Constraint_expected_count
_NOE_completeness_shell.Constraint_matched_count
_NOE_completeness_shell.Matched_shell_1
_NOE_completeness_shell.Matched_shell_2
_NOE_completeness_shell.Matched_shell_3
_NOE_completeness_shell.Matched_shell_4
_NOE_completeness_shell.Matched_shell_5
_NOE_completeness_shell.Matched_shell_6
_NOE_completeness_shell.Matched_shell_7
_NOE_completeness_shell.Matched_shell_8
_NOE_completeness_shell.Matched_shell_9
_NOE_completeness_shell.Matched_shell_overflow
_NOE_completeness_shell.Completeness_shell_pct
_NOE_completeness_shell.Completeness_cumulative_pct
edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . .
shell 0.00 2.00 139 91 0 4 14 14 5 6 9 9 . 30 65.5 65.5
shell 2.00 2.50 364 254 0 17 74 34 18 16 12 23 . 60 69.8 68.6
shell 2.50 3.00 447 248 0 1 17 38 28 15 17 33 . 99 55.5 62.4
shell 3.00 3.50 749 340 0 2 16 55 50 25 19 34 . 139 45.4 54.9
shell 3.50 4.00 1083 394 0 0 1 49 50 46 18 43 . 187 36.4 47.7
shell 4.00 4.50 1801 424 0 0 0 1 88 63 35 29 . 208 23.5 38.2
shell 4.50 5.00 2192 262 0 0 0 0 1 42 27 17 . 175 12.0 29.7
shell 5.00 5.50 2533 145 0 0 0 0 0 0 12 5 . 128 5.7 23.2
shell 5.50 6.00 2854 49 0 0 0 0 0 0 0 3 . 46 1.7 18.1
shell 6.00 6.50 3262 18 0 0 0 0 0 0 0 0 . 18 0.6 14.4
shell 6.50 7.00 3498 7 0 0 0 0 0 0 0 0 . 7 0.2 11.8
shell 7.00 7.50 3837 0 0 0 0 0 0 0 0 0 . 0 0.0 9.8
shell 7.50 8.00 3959 0 0 0 0 0 0 0 0 0 . 0 0.0 8.4
shell 8.00 8.50 4162 0 0 0 0 0 0 0 0 0 . 0 0.0 7.2
shell 8.50 9.00 4433 0 0 0 0 0 0 0 0 0 . 0 0.0 6.3
sums . . 35313 2232 0 24 122 191 240 213 149 196 . 1,097 . .
stop_
loop_
_NOE_completeness_comp.Entity_assembly_ID
_NOE_completeness_comp.Comp_index_ID
_NOE_completeness_comp.Comp_ID
_NOE_completeness_comp.Obs_atom_count
_NOE_completeness_comp.Constraint_observed_count
_NOE_completeness_comp.Constraint_expected_count
_NOE_completeness_comp.Constraint_matched_count
_NOE_completeness_comp.Completeness_cumulative_pct
_NOE_completeness_comp.Std_dev
_NOE_completeness_comp.Details
1 1 MET 6 9 11 5 45.5 -0.4 .
1 2 VAL 5 16 45 9 20.0 -2.2 >sigma
1 3 ASP 4 25 27 13 48.1 -0.2 .
1 4 LYS 7 25 28 15 53.6 0.2 .
1 5 GLY 3 17 19 12 63.2 0.9 .
1 6 VAL 5 30 41 19 46.3 -0.3 .
1 7 LYS 7 33 66 21 31.8 -1.3 >sigma
1 8 ILE 6 73 67 32 47.8 -0.2 .
1 9 LYS 7 44 52 23 44.2 -0.4 .
1 10 VAL 5 75 65 42 64.6 1.0 >sigma
1 11 ASP 4 32 31 17 54.8 0.3 .
1 12 TYR 6 60 57 27 47.4 -0.2 .
1 13 ILE 6 35 65 25 38.5 -0.9 .
1 14 GLY 3 14 27 9 33.3 -1.2 >sigma
1 15 LYS 7 55 73 35 47.9 -0.2 .
1 16 LEU 7 52 52 26 50.0 -0.0 .
1 17 GLU 5 19 24 9 37.5 -0.9 .
1 18 SER 4 13 10 5 50.0 -0.0 .
1 19 GLY 3 17 17 11 64.7 1.1 >sigma
1 20 ASP 4 21 21 13 61.9 0.9 .
1 21 VAL 5 34 46 23 50.0 -0.0 .
1 22 PHE 7 46 40 28 70.0 1.4 >sigma
1 23 ASP 4 17 22 11 50.0 -0.0 .
1 24 THR 4 27 33 15 45.5 -0.4 .
1 25 SER 4 19 27 11 40.7 -0.7 .
1 26 ILE 6 38 44 16 36.4 -1.0 >sigma
1 27 GLU 5 32 32 20 62.5 0.9 .
1 28 GLU 5 21 25 13 52.0 0.1 .
1 29 VAL 5 25 51 14 27.5 -1.7 >sigma
1 30 ALA 3 33 38 21 55.3 0.4 .
1 31 LYS 7 29 33 15 45.5 -0.4 .
1 32 GLU 5 15 21 10 47.6 -0.2 .
1 33 ALA 3 28 30 17 56.7 0.5 .
1 34 GLY 3 16 13 7 53.8 0.3 .
1 35 ILE 6 32 39 15 38.5 -0.9 .
1 36 TYR 6 45 36 22 61.1 0.8 .
1 37 ALA 3 21 19 15 78.9 2.1 >sigma
1 38 PRO 5 18 14 10 71.4 1.5 >sigma
1 39 ASP 4 11 10 8 80.0 2.2 >sigma
1 40 ARG 7 28 22 14 63.6 1.0 .
1 41 GLU 5 15 11 7 63.6 1.0 .
1 42 TYR 6 46 46 27 58.7 0.6 .
1 43 GLU 5 9 12 6 50.0 -0.0 .
1 44 PRO 5 14 28 10 35.7 -1.1 >sigma
1 45 LEU 7 43 34 22 64.7 1.1 >sigma
1 46 GLU 5 30 36 18 50.0 -0.0 .
1 47 PHE 7 80 90 49 54.4 0.3 .
1 48 VAL 5 41 56 25 44.6 -0.4 .
1 49 VAL 5 33 68 21 30.9 -1.4 >sigma
1 50 GLY 3 15 26 8 30.8 -1.4 >sigma
1 51 GLU 5 18 29 15 51.7 0.1 .
1 52 GLY 3 9 7 5 71.4 1.5 >sigma
1 53 GLN 7 23 39 10 25.6 -1.8 >sigma
1 54 LEU 7 50 58 30 51.7 0.1 .
1 55 ILE 6 63 65 40 61.5 0.8 .
1 56 GLN 7 19 31 11 35.5 -1.1 >sigma
1 57 GLY 3 26 41 17 41.5 -0.6 .
1 58 PHE 7 70 82 40 48.8 -0.1 .
1 59 GLU 5 31 47 18 38.3 -0.9 .
1 60 GLU 5 22 26 12 46.2 -0.3 .
1 61 ALA 3 23 30 16 53.3 0.2 .
1 62 VAL 5 41 64 29 45.3 -0.4 .
1 63 LEU 7 30 45 20 44.4 -0.4 .
1 64 ASP 4 11 8 6 75.0 1.8 >sigma
1 65 MET 6 42 52 26 50.0 -0.0 .
1 66 GLU 5 16 19 10 52.6 0.2 .
1 67 VAL 5 27 32 15 46.9 -0.2 .
1 68 GLY 3 19 14 12 85.7 2.6 >sigma
1 69 ASP 4 27 26 19 73.1 1.7 >sigma
1 70 GLU 5 17 27 10 37.0 -1.0 .
1 71 LYS 7 26 40 21 52.5 0.2 .
1 72 THR 4 25 23 16 69.6 1.4 >sigma
1 73 VAL 5 25 28 12 42.9 -0.5 .
1 74 LYS 7 21 39 16 41.0 -0.7 .
1 75 ILE 6 62 75 35 46.7 -0.3 .
1 76 PRO 5 17 40 16 40.0 -0.8 .
1 77 ALA 3 33 34 23 67.6 1.3 >sigma
1 78 GLU 5 26 33 17 51.5 0.1 .
1 79 LYS 7 32 65 22 33.8 -1.2 >sigma
1 80 ALA 3 45 42 30 71.4 1.5 >sigma
1 81 TYR 6 37 34 23 67.6 1.3 >sigma
1 82 GLY 3 20 16 13 81.3 2.3 >sigma
1 83 ASN 6 18 23 10 43.5 -0.5 .
1 84 ARG 7 16 31 11 35.5 -1.1 >sigma
1 85 ASN 6 30 33 20 60.6 0.8 .
1 86 GLU 5 10 14 8 57.1 0.5 .
1 87 MET 6 14 20 8 40.0 -0.8 .
1 88 LEU 7 55 59 35 59.3 0.7 .
1 89 ILE 6 36 37 19 51.4 0.1 .
1 90 GLN 7 40 42 21 50.0 -0.0 .
1 91 LYS 7 30 27 19 70.4 1.5 >sigma
1 92 ILE 6 33 50 20 40.0 -0.8 .
1 93 PRO 5 26 26 19 73.1 1.7 >sigma
1 94 ARG 7 27 55 15 27.3 -1.7 >sigma
1 95 ASP 4 25 21 11 52.4 0.2 .
1 96 ALA 3 26 24 16 66.7 1.2 >sigma
1 97 PHE 7 54 57 26 45.6 -0.3 .
1 98 LYS 7 16 18 7 38.9 -0.8 .
1 99 GLU 5 8 12 4 33.3 -1.2 >sigma
1 100 ALA 3 19 18 11 61.1 0.8 .
1 101 ASP 4 7 6 5 83.3 2.4 >sigma
1 102 PHE 7 26 19 10 52.6 0.2 .
1 103 GLU 5 12 15 9 60.0 0.7 .
1 104 PRO 5 35 55 24 43.6 -0.5 .
1 105 GLU 5 18 28 12 42.9 -0.5 .
1 106 GLU 5 24 28 15 53.6 0.2 .
1 107 GLY 3 18 12 9 75.0 1.8 >sigma
1 108 MET 6 28 46 18 39.1 -0.8 .
1 109 VAL 5 11 32 8 25.0 -1.8 >sigma
1 110 ILE 6 29 34 13 38.2 -0.9 .
1 111 LEU 7 38 44 24 54.5 0.3 .
1 112 ALA 3 22 10 6 60.0 0.7 .
1 113 GLU 5 5 13 5 38.5 -0.9 .
1 114 GLY 3 21 18 14 77.8 2.0 >sigma
1 115 ILE 6 33 26 17 65.4 1.1 >sigma
1 116 PRO 5 30 38 21 55.3 0.4 .
1 117 ALA 3 40 36 25 69.4 1.4 >sigma
1 118 THR 4 28 28 16 57.1 0.5 .
1 119 ILE 6 58 93 39 41.9 -0.6 .
1 120 THR 4 26 27 17 63.0 0.9 .
1 121 GLU 5 25 31 16 51.6 0.1 .
1 122 VAL 5 22 38 15 39.5 -0.8 .
1 123 THR 4 22 25 12 48.0 -0.2 .
1 124 ASP 4 11 15 7 46.7 -0.3 .
1 125 ASN 6 17 26 10 38.5 -0.9 .
1 126 GLU 5 28 30 14 46.7 -0.3 .
1 127 VAL 5 28 65 13 20.0 -2.2 >sigma
1 128 THR 4 39 43 26 60.5 0.7 .
1 129 LEU 7 52 80 32 40.0 -0.8 .
1 130 ASP 4 33 35 20 57.1 0.5 .
1 131 PHE 7 51 43 28 65.1 1.1 >sigma
1 132 ASN 6 25 43 17 39.5 -0.8 .
1 133 HIS 6 20 33 16 48.5 -0.1 .
1 134 GLU 5 19 25 11 44.0 -0.5 .
1 135 LEU 7 56 67 33 49.3 -0.1 .
1 136 ALA 3 21 32 15 46.9 -0.2 .
1 137 GLY 3 14 26 12 46.2 -0.3 .
1 138 LYS 7 28 60 16 26.7 -1.7 >sigma
1 139 ASP 4 23 31 20 64.5 1.0 >sigma
1 140 LEU 7 35 79 24 30.4 -1.5 >sigma
1 141 VAL 5 31 51 17 33.3 -1.2 >sigma
1 142 PHE 7 64 72 32 44.4 -0.4 .
1 143 THR 4 40 40 18 45.0 -0.4 .
1 144 ILE 6 79 80 49 61.3 0.8 .
1 145 LYS 7 33 39 15 38.5 -0.9 .
1 146 ILE 6 59 80 38 47.5 -0.2 .
1 147 ILE 6 34 45 18 40.0 -0.8 .
1 148 GLU 5 24 30 15 50.0 -0.0 .
1 149 VAL 5 22 37 13 35.1 -1.1 >sigma
1 150 VAL 5 27 47 16 34.0 -1.2 >sigma
1 151 GLU 5 11 30 8 26.7 -1.7 >sigma
stop_
save_
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