NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing in_recoord in_dress stage program type subtype subsubtype
371408 1cky 4596 cing recoord dress 4-filtered-FRED Wattos check stereo assignment distance


data_1cky


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        28
    _Stereo_assign_list.Swap_count           0
    _Stereo_assign_list.Swap_percentage      0.0
    _Stereo_assign_list.Deassign_count       0
    _Stereo_assign_list.Deassign_percentage  0.0
    _Stereo_assign_list.Model_count          10
    _Stereo_assign_list.Total_e_low_states   0.143
    _Stereo_assign_list.Total_e_high_states  2.128
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1  1 MET QB 28 no 100.0   0.0 0.000 0.000 0.000 2 0 no 0.000 0 0 
       1  1 MET QG 27 no 100.0   0.0 0.000 0.000 0.000 2 0 no 0.000 0 0 
       1  2 PRO QB 26 no 100.0   0.0 0.000 0.000 0.000 2 0 no 0.000 0 0 
       1  2 PRO QD 25 no 100.0   0.0 0.000 0.000 0.000 2 0 no 0.000 0 0 
       1  2 PRO QG 24 no 100.0   0.0 0.000 0.000 0.000 2 0 no 0.000 0 0 
       1  3 GLY QA 23 no 100.0   0.0 0.000 0.001 0.001 4 0 no 0.076 0 0 
       1  5 ILE QG 22 no 100.0  99.9 0.977 0.978 0.001 4 0 no 0.047 0 0 
       1  7 GLU QB 16 no 100.0   0.0 0.000 0.004 0.004 6 0 no 0.208 0 0 
       1  7 GLU QG 15 no 100.0   0.0 0.000 0.001 0.001 6 0 no 0.041 0 0 
       1  8 ASN QB 14 no 100.0   0.0 0.000 0.015 0.015 6 0 no 0.259 0 0 
       1  9 ILE QG 21 no  60.0  98.9 0.269 0.272 0.003 4 0 no 0.112 0 0 
       1 10 ILE QG 13 no  80.0  99.1 0.739 0.745 0.007 6 0 no 0.202 0 0 
       1 11 PHE QB  5 no 100.0   0.0 0.000 0.032 0.032 8 0 no 0.282 0 0 
       1 12 GLY QA 12 no   0.0   0.0 0.000 0.021 0.021 6 0 no 0.222 0 0 
       1 13 VAL QG  4 no  20.0 100.0 0.002 0.002 0.000 8 0 no 0.000 0 0 
       1 14 SER QB 20 no   0.0   0.0 0.000 0.005 0.005 4 0 no 0.134 0 0 
       1 15 TYR QB  3 no 100.0   0.0 0.000 0.008 0.008 8 0 no 0.179 0 0 
       1 16 ASP QB 11 no 100.0   0.0 0.000 0.001 0.001 6 0 no 0.062 0 0 
       1 17 GLU QG 10 no 100.0   0.0 0.000 0.000 0.000 6 0 no 0.054 0 0 
       1 18 TYR QB  2 no 100.0   0.0 0.000 0.003 0.003 8 0 no 0.154 0 0 
       1 19 ARG QB  9 no 100.0   0.0 0.000 0.012 0.012 6 0 no 0.207 0 0 
       1 19 ARG QG  8 no   0.0   0.0 0.000 0.003 0.003 6 0 no 0.107 0 0 
       1 20 TYR QB  1 no 100.0   0.0 0.000 0.010 0.010 8 0 no 0.195 0 0 
       1 21 ARG QB  7 no 100.0   0.0 0.000 0.004 0.004 6 0 no 0.189 0 0 
       1 21 ARG QG  6 no 100.0   0.0 0.000 0.006 0.006 6 0 no 0.211 0 0 
       1 23 VAL QG 17 no 100.0 100.0 0.000 0.000 0.000 5 0 no 0.034 0 0 
       1 24 ILE QG 19 no 100.0   0.0 0.000 0.000 0.000 4 0 no 0.007 0 0 
       1 25 LYS QB 18 no 100.0   0.0 0.000 0.005 0.005 4 0 no 0.175 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Friday, April 26, 2024 10:22:09 AM GMT (wattos1)