NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
622600 | 5yi4 | 36119 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_5yi4 save_NOE_Completeness _NOE_completeness_stats.Sf_category NOE_completeness_statistics _NOE_completeness_stats.Model_count 20 _NOE_completeness_stats.Residue_count 145 _NOE_completeness_stats.Total_atom_count 2173 _NOE_completeness_stats.Observable_atom_definition ob_standard _NOE_completeness_stats.Observable_atom_count 763 _NOE_completeness_stats.Use_intra_residue_restraints no _NOE_completeness_stats.Redundancy_threshold_pct 5.0 _NOE_completeness_stats.Distance_averaging_power 1.00 _NOE_completeness_stats.Completeness_cutoff 4.00 _NOE_completeness_stats.Completeness_cumulative_pct 52.5 _NOE_completeness_stats.Constraint_unexpanded_count 1757 _NOE_completeness_stats.Constraint_count 1766 _NOE_completeness_stats.Constraint_exp_unfiltered_count 1470 _NOE_completeness_stats.Constraint_exceptional_count 0 _NOE_completeness_stats.Constraint_nonobservable_count 150 _NOE_completeness_stats.Constraint_intraresidue_count 0 _NOE_completeness_stats.Constraint_surplus_count 184 _NOE_completeness_stats.Constraint_observed_count 1432 _NOE_completeness_stats.Constraint_expected_count 1351 _NOE_completeness_stats.Constraint_matched_count 709 _NOE_completeness_stats.Constraint_unmatched_count 723 _NOE_completeness_stats.Constraint_exp_nonobs_count 642 _NOE_completeness_stats.Details ; A detailed methodology description is available at: http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html Please note that the contributions in ambiguous restraints are considered separate 'restraints' for the sets defined below. The cut off for all statistics except those in the by-shell table is given below by the above tag: _NOE_completeness_stats.Completeness_cutoff Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * Number of models * 5 * Number of residues * 6 * Number of atoms * 7 * Standard set name of observable atom definitions see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999). * 8 * Observable atom(group)s * 9 * Include intra residue restraints * 10 * Surplus threshold for determining redundant restraints * 11 * Power for averaging the distance over models * 12 * Up to what distance are NOEs expected * 13 * Cumulative completeness percentage * 14 * Number of unexpanded restraints in restraint list. * 15 * Number of restraints in restraint list. Set U * 16 * Expected restraints based on criteria in list. Set V Set V differs from set B only if intra residue restraints are analyzed. * 17 * Exceptional restraints, i.e. with an unknown atom.Set E * 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O Even though restraints with these atom types might have been observed they are excluded from the analysis. * 19 * Intra-residue restraints if not to be analyzed. Set I * 20 * Surplus like double restraints. Set S * 21 * Observed restraints. Set A = U - (E u O u I u S) * 22 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 23 * Observed restraints matched to the expected. Set M = A n B * 24 * Observed restraints that were not expected. Set C = A - M * 25 * Expected restraints that were not observed. Set D = B - M * 26 * This tag Description of the tags in the class table: * 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts. Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular. * 2 * Observed restraints. Set A = U - (E u O u I u S) * 3 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 4 * Observed restraints matched to the expected. Set M = A n B * 5 * Completeness percentage * 6 * Standard deviation from the average over the classes. * 7 * Extra information * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the shell table. The first row shows the lower limit of the shells requested and The last row shows the total number of restraints over the shells. * 1 * Description of the content of the row: edges, shell, or sums. The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others. * 2 * Lower limit of shell of expected restraints. * 3 * Upper limit of shell of expected restraints. * 4 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 5 * Observed restraints matched to the expected. Set M = A n B * 6 * Matched restraints with experimental distance in shell 1 * 7 * Matched restraints with experimental distance in shell 2 * 8 * Matched restraints with experimental distance in shell 3 * 9 * Matched restraints with experimental distance in shell 4 * 10 * Matched restraints with experimental distance in shell 5 * 11 * Matched restraints with experimental distance in shell 6 * 12 * Matched restraints with experimental distance in shell 7 * 13 * Matched restraints with experimental distance in shell 8 * 14 * Matched restraints with experimental distance in shell 9 * 15 * Matched restraints overflowing the last shell * 16 * Completeness percentage for this shell * 17 * Completeness percentage up to upper limit of this shell * 18 * Administrative tag * 19 * Administrative tag Description of the tags in the residue table: * 1 * Chain identifier * 2 * Residue number * 3 * Residue name * 4 * Observable atom(group)s for this residue. * 5 * Observed restraints. Set A = U - (E u O u I u S) * 6 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 7 * Observed restraints matched to the expected. Set M = A n B * 8 * Completeness percentage * 9 * Standard deviation from the average over the residues. * 10 * Extra information * 11 * Administrative tag * 12 * Administrative tag ; loop_ _NOE_completeness_class.Type _NOE_completeness_class.Constraint_observed_count _NOE_completeness_class.Constraint_expected_count _NOE_completeness_class.Constraint_matched_count _NOE_completeness_class.Completeness_cumulative_pct _NOE_completeness_class.Std_dev _NOE_completeness_class.Details intraresidue 0 0 0 . . "no intras" sequential 539 667 371 55.6 0.6 . medium-range 567 407 220 54.1 0.4 . long-range 326 277 118 42.6 -1.0 >sigma intermolecular 0 0 0 . . "no multimer" stop_ loop_ _NOE_completeness_shell.Type _NOE_completeness_shell.Shell_start _NOE_completeness_shell.Shell_end _NOE_completeness_shell.Constraint_expected_count _NOE_completeness_shell.Constraint_matched_count _NOE_completeness_shell.Matched_shell_1 _NOE_completeness_shell.Matched_shell_2 _NOE_completeness_shell.Matched_shell_3 _NOE_completeness_shell.Matched_shell_4 _NOE_completeness_shell.Matched_shell_5 _NOE_completeness_shell.Matched_shell_6 _NOE_completeness_shell.Matched_shell_7 _NOE_completeness_shell.Matched_shell_8 _NOE_completeness_shell.Matched_shell_9 _NOE_completeness_shell.Matched_shell_overflow _NOE_completeness_shell.Completeness_shell_pct _NOE_completeness_shell.Completeness_cumulative_pct edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . . shell 0.00 2.00 8 6 0 0 1 0 0 0 1 0 . 4 75.0 75.0 shell 2.00 2.50 58 42 0 0 6 0 0 0 2 3 . 31 72.4 72.7 shell 2.50 3.00 303 216 0 0 78 0 5 1 17 48 . 67 71.3 71.5 shell 3.00 3.50 370 173 0 0 0 1 20 2 16 34 . 100 46.8 59.1 shell 3.50 4.00 612 272 0 0 0 0 131 0 5 29 . 107 44.4 52.5 shell 4.00 4.50 946 209 0 0 0 0 0 0 4 76 . 129 22.1 40.0 shell 4.50 5.00 1511 151 0 0 0 0 0 0 1 7 . 143 10.0 28.1 shell 5.00 5.50 1943 137 0 0 0 0 0 0 0 2 . 135 7.1 21.0 shell 5.50 6.00 2155 114 0 0 0 0 0 0 0 0 . 114 5.3 16.7 shell 6.00 6.50 2242 51 0 0 0 0 0 0 0 0 . 51 2.3 13.5 shell 6.50 7.00 2302 27 0 0 0 0 0 0 0 0 . 27 1.2 11.2 shell 7.00 7.50 2370 15 0 0 0 0 0 0 0 0 . 15 0.6 9.5 shell 7.50 8.00 2801 5 0 0 0 0 0 0 0 0 . 5 0.2 8.0 shell 8.00 8.50 2876 6 0 0 0 0 0 0 0 0 . 6 0.2 6.9 shell 8.50 9.00 2864 4 0 0 0 0 0 0 0 0 . 4 0.1 6.1 sums . . 23361 1428 0 0 85 1 156 3 46 199 . 938 . . stop_ loop_ _NOE_completeness_comp.Entity_assembly_ID _NOE_completeness_comp.Comp_index_ID _NOE_completeness_comp.Comp_ID _NOE_completeness_comp.Obs_atom_count _NOE_completeness_comp.Constraint_observed_count _NOE_completeness_comp.Constraint_expected_count _NOE_completeness_comp.Constraint_matched_count _NOE_completeness_comp.Completeness_cumulative_pct _NOE_completeness_comp.Std_dev _NOE_completeness_comp.Details 1 1 GLY 3 0 2 0 0.0 -2.3 >sigma 1 2 SER 4 5 9 2 22.2 -1.3 >sigma 1 3 GLU 5 7 9 3 33.3 -0.8 . 1 4 PHE 7 16 13 4 30.8 -0.9 . 1 5 GLY 3 11 8 5 62.5 0.6 . 1 6 PRO 5 12 7 6 85.7 1.6 >sigma 1 7 TRP 10 21 6 6 100.0 2.3 >sigma 1 8 LYS 7 17 6 5 83.3 1.5 >sigma 1 9 GLU 5 16 9 7 77.8 1.3 >sigma 1 10 ASP 4 14 10 6 60.0 0.4 . 1 11 SER 4 15 10 4 40.0 -0.5 . 1 12 HIS 6 27 14 5 35.7 -0.7 . 1 13 ILE 6 50 27 13 48.1 -0.1 . 1 14 VAL 5 49 38 22 57.9 0.3 . 1 15 SER 4 27 18 13 72.2 1.0 >sigma 1 16 ALA 3 23 15 9 60.0 0.4 . 1 17 GLU 5 38 25 12 48.0 -0.1 . 1 18 VAL 5 62 38 26 68.4 0.8 . 1 19 GLY 3 17 14 11 78.6 1.3 >sigma 1 20 GLU 5 28 13 10 76.9 1.2 >sigma 1 21 LYS 7 45 30 17 56.7 0.3 . 1 22 CYS 4 43 23 17 73.9 1.1 >sigma 1 23 GLU 5 19 13 9 69.2 0.9 . 1 24 ALA 3 23 16 10 62.5 0.6 . 1 25 ILE 6 58 45 23 51.1 0.0 . 1 26 GLY 3 19 14 10 71.4 1.0 . 1 27 VAL 5 23 17 12 70.6 0.9 . 1 28 LYS 7 47 34 20 58.8 0.4 . 1 29 LEU 7 42 42 20 47.6 -0.1 . 1 30 LEU 7 24 18 15 83.3 1.5 >sigma 1 31 HIS 6 23 15 11 73.3 1.1 >sigma 1 32 LEU 7 42 53 27 50.9 0.0 . 1 33 GLU 5 29 24 15 62.5 0.6 . 1 34 ASP 4 23 15 13 86.7 1.7 >sigma 1 35 GLN 7 23 14 9 64.3 0.6 . 1 36 LEU 7 51 58 31 53.4 0.1 . 1 37 LEU 7 30 18 12 66.7 0.7 . 1 38 GLY 3 14 9 6 66.7 0.7 . 1 39 ALA 3 21 26 12 46.2 -0.2 . 1 40 MET 6 35 31 16 51.6 0.0 . 1 41 TYR 6 18 13 7 53.8 0.2 . 1 42 SER 4 5 13 5 38.5 -0.6 . 1 43 HIS 6 9 14 7 50.0 -0.0 . 1 44 ASP 4 28 16 11 68.8 0.8 . 1 45 GLU 5 23 14 9 64.3 0.6 . 1 46 ALA 3 22 19 11 57.9 0.3 . 1 47 LEU 7 54 57 28 49.1 -0.1 . 1 48 PHE 7 48 30 23 76.7 1.2 >sigma 1 49 GLN 7 23 16 13 81.3 1.4 >sigma 1 50 SER 4 19 14 10 71.4 1.0 . 1 51 LEU 7 50 55 27 49.1 -0.1 . 1 52 GLN 7 23 17 12 70.6 0.9 . 1 53 GLY 3 14 13 8 61.5 0.5 . 1 54 GLU 5 30 32 16 50.0 -0.0 . 1 55 LEU 7 37 35 17 48.6 -0.1 . 1 56 GLN 7 17 18 12 66.7 0.7 . 1 57 THR 4 27 23 16 69.6 0.9 . 1 58 VAL 5 39 46 21 45.7 -0.2 . 1 59 LYS 7 20 23 13 56.5 0.3 . 1 60 GLU 5 18 15 11 73.3 1.1 >sigma 1 61 THR 4 44 26 19 73.1 1.0 >sigma 1 62 LEU 7 51 48 23 47.9 -0.1 . 1 63 GLN 7 17 16 11 68.8 0.8 . 1 64 ALA 3 29 17 13 76.5 1.2 >sigma 1 65 MET 6 59 45 23 51.1 0.0 . 1 66 ILE 6 26 27 16 59.3 0.4 . 1 67 LEU 7 18 16 12 75.0 1.1 >sigma 1 68 GLN 7 25 16 8 50.0 -0.0 . 1 69 LEU 7 35 38 18 47.4 -0.1 . 1 70 GLN 7 9 11 6 54.5 0.2 . 1 71 PRO 5 10 8 5 62.5 0.6 . 1 72 THR 4 8 7 5 71.4 1.0 . 1 73 LYS 7 4 9 3 33.3 -0.8 . 1 74 GLU 5 5 10 3 30.0 -1.0 . 1 75 ALA 3 5 8 4 50.0 -0.0 . 1 76 GLY 3 5 6 2 33.3 -0.8 . 1 77 GLU 5 6 8 3 37.5 -0.6 . 1 78 ALA 3 4 8 3 37.5 -0.6 . 1 79 SER 4 4 7 2 28.6 -1.0 >sigma 1 80 ALA 3 1 7 1 14.3 -1.7 >sigma 1 81 SER 4 0 7 0 0.0 -2.3 >sigma 1 82 TYR 6 3 9 1 11.1 -1.8 >sigma 1 83 PRO 5 3 8 1 12.5 -1.8 >sigma 1 84 THR 4 0 7 0 0.0 -2.3 >sigma 1 85 ALA 3 0 7 0 0.0 -2.3 >sigma 1 86 GLY 3 0 6 0 0.0 -2.3 >sigma 1 87 ALA 3 3 7 2 28.6 -1.0 >sigma 1 88 GLN 7 3 6 2 33.3 -0.8 . 1 89 GLU 5 3 9 2 22.2 -1.3 >sigma 1 90 THR 4 6 10 4 40.0 -0.5 . 1 91 GLU 5 6 9 5 55.6 0.2 . 1 92 ALA 3 4 9 3 33.3 -0.8 . 1 93 LEU 7 0 8 0 0.0 -2.3 >sigma 1 94 VAL 5 2 10 2 20.0 -1.4 >sigma 1 95 PRO 5 4 9 3 33.3 -0.8 . 1 96 ARG 7 6 9 3 33.3 -0.8 . 1 97 GLY 3 3 8 2 25.0 -1.2 >sigma 1 98 SER 4 0 7 0 0.0 -2.3 >sigma 1 99 GLY 3 0 7 0 0.0 -2.3 >sigma 1 100 PHE 7 2 8 2 25.0 -1.2 >sigma 1 101 GLY 3 2 8 2 25.0 -1.2 >sigma 1 102 THR 4 4 6 3 50.0 -0.0 . 1 103 SER 4 6 8 4 50.0 -0.0 . 1 104 PRO 5 7 13 2 15.4 -1.6 >sigma 1 105 LEU 7 19 25 7 28.0 -1.0 >sigma 1 106 THR 4 9 9 3 33.3 -0.8 . 1 107 PRO 5 14 6 4 66.7 0.7 . 1 108 SER 4 16 14 6 42.9 -0.4 . 1 109 ALA 3 31 20 13 65.0 0.7 . 1 110 ARG 7 15 23 8 34.8 -0.7 . 1 111 ILE 6 25 19 12 63.2 0.6 . 1 112 SER 4 19 18 13 72.2 1.0 >sigma 1 113 ALA 3 24 27 14 51.9 0.1 . 1 114 LEU 7 22 28 12 42.9 -0.4 . 1 115 ASN 6 19 14 10 71.4 1.0 . 1 116 ILE 6 46 41 21 51.2 0.0 . 1 117 VAL 5 42 45 18 40.0 -0.5 . 1 118 GLY 3 13 13 8 61.5 0.5 . 1 119 ASP 4 21 17 14 82.4 1.5 >sigma 1 120 LEU 7 31 58 14 24.1 -1.2 >sigma 1 121 LEU 7 21 32 11 34.4 -0.8 . 1 122 ARG 7 17 17 12 70.6 0.9 . 1 123 LYS 7 15 25 8 32.0 -0.9 . 1 124 VAL 5 41 43 19 44.2 -0.3 . 1 125 GLY 3 12 16 8 50.0 -0.0 . 1 126 ALA 3 12 12 7 58.3 0.4 . 1 127 LEU 7 41 42 24 57.1 0.3 . 1 128 GLU 5 23 27 14 51.9 0.1 . 1 129 SER 4 13 14 9 64.3 0.6 . 1 130 LYS 7 18 18 10 55.6 0.2 . 1 131 LEU 7 38 53 21 39.6 -0.5 . 1 132 ALA 3 16 21 12 57.1 0.3 . 1 133 ALA 3 16 16 10 62.5 0.6 . 1 134 CYS 4 18 16 11 68.8 0.8 . 1 135 ARG 7 24 26 15 57.7 0.3 . 1 136 ASN 6 20 18 13 72.2 1.0 >sigma 1 137 PHE 7 27 17 10 58.8 0.4 . 1 138 ALA 3 18 15 11 73.3 1.1 >sigma 1 139 LYS 7 16 14 10 71.4 1.0 . 1 140 ASP 4 13 14 8 57.1 0.3 . 1 141 GLN 7 16 12 9 75.0 1.1 >sigma 1 142 ALA 3 8 10 6 60.0 0.4 . 1 143 SER 4 5 10 5 50.0 -0.0 . 1 144 ARG 7 4 10 3 30.0 -1.0 . 1 145 LYS 7 1 5 1 20.0 -1.4 >sigma stop_ save_
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