NMR Restraints Grid |
Result table
image | mrblock_id | pdb_id | bmrb_id | cing | stage | program | type | subtype | subsubtype |
424687 | 2g0q | 7007 | cing | 4-filtered-FRED | Wattos | check | completeness | distance |
data_2g0q save_NOE_Completeness _NOE_completeness_stats.Sf_category NOE_completeness_statistics _NOE_completeness_stats.Model_count 20 _NOE_completeness_stats.Residue_count 173 _NOE_completeness_stats.Total_atom_count 2422 _NOE_completeness_stats.Observable_atom_definition ob_standard _NOE_completeness_stats.Observable_atom_count 852 _NOE_completeness_stats.Use_intra_residue_restraints no _NOE_completeness_stats.Redundancy_threshold_pct 5.0 _NOE_completeness_stats.Distance_averaging_power 1.00 _NOE_completeness_stats.Completeness_cutoff 4.00 _NOE_completeness_stats.Completeness_cumulative_pct 43.4 _NOE_completeness_stats.Constraint_unexpanded_count 1920 _NOE_completeness_stats.Constraint_count 1920 _NOE_completeness_stats.Constraint_exp_unfiltered_count 2156 _NOE_completeness_stats.Constraint_exceptional_count 0 _NOE_completeness_stats.Constraint_nonobservable_count 5 _NOE_completeness_stats.Constraint_intraresidue_count 475 _NOE_completeness_stats.Constraint_surplus_count 185 _NOE_completeness_stats.Constraint_observed_count 1255 _NOE_completeness_stats.Constraint_expected_count 1994 _NOE_completeness_stats.Constraint_matched_count 866 _NOE_completeness_stats.Constraint_unmatched_count 389 _NOE_completeness_stats.Constraint_exp_nonobs_count 1128 _NOE_completeness_stats.Details ; A detailed methodology description is available at: http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html Please note that the contributions in ambiguous restraints are considered separate 'restraints' for the sets defined below. The cut off for all statistics except those in the by-shell table is given below by the above tag: _NOE_completeness_stats.Completeness_cutoff Description of the tags in this list: * 1 * Administrative tag * 2 * Administrative tag * 3 * Administrative tag * 4 * Number of models * 5 * Number of residues * 6 * Number of atoms * 7 * Standard set name of observable atom definitions see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999). * 8 * Observable atom(group)s * 9 * Include intra residue restraints * 10 * Surplus threshold for determining redundant restraints * 11 * Power for averaging the distance over models * 12 * Up to what distance are NOEs expected * 13 * Cumulative completeness percentage * 14 * Number of unexpanded restraints in restraint list. * 15 * Number of restraints in restraint list. Set U * 16 * Expected restraints based on criteria in list. Set V Set V differs from set B only if intra residue restraints are analyzed. * 17 * Exceptional restraints, i.e. with an unknown atom.Set E * 18 * Not observable NOEs with e.g. hydroxyl Ser HG. Set O Even though restraints with these atom types might have been observed they are excluded from the analysis. * 19 * Intra-residue restraints if not to be analyzed. Set I * 20 * Surplus like double restraints. Set S * 21 * Observed restraints. Set A = U - (E u O u I u S) * 22 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 23 * Observed restraints matched to the expected. Set M = A n B * 24 * Observed restraints that were not expected. Set C = A - M * 25 * Expected restraints that were not observed. Set D = B - M * 26 * This tag Description of the tags in the class table: * 1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts. Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular. * 2 * Observed restraints. Set A = U - (E u O u I u S) * 3 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 4 * Observed restraints matched to the expected. Set M = A n B * 5 * Completeness percentage * 6 * Standard deviation from the average over the classes. * 7 * Extra information * 8 * Administrative tag * 9 * Administrative tag Description of the tags in the shell table. The first row shows the lower limit of the shells requested and The last row shows the total number of restraints over the shells. * 1 * Description of the content of the row: edges, shell, or sums. The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others. * 2 * Lower limit of shell of expected restraints. * 3 * Upper limit of shell of expected restraints. * 4 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 5 * Observed restraints matched to the expected. Set M = A n B * 6 * Matched restraints with experimental distance in shell 1 * 7 * Matched restraints with experimental distance in shell 2 * 8 * Matched restraints with experimental distance in shell 3 * 9 * Matched restraints with experimental distance in shell 4 * 10 * Matched restraints with experimental distance in shell 5 * 11 * Matched restraints with experimental distance in shell 6 * 12 * Matched restraints with experimental distance in shell 7 * 13 * Matched restraints with experimental distance in shell 8 * 14 * Matched restraints with experimental distance in shell 9 * 15 * Matched restraints overflowing the last shell * 16 * Completeness percentage for this shell * 17 * Completeness percentage up to upper limit of this shell * 18 * Administrative tag * 19 * Administrative tag Description of the tags in the residue table: * 1 * Chain identifier * 2 * Residue number * 3 * Residue name * 4 * Observable atom(group)s for this residue. * 5 * Observed restraints. Set A = U - (E u O u I u S) * 6 * Expected restraints based on criteria as in A. Set B = V - (I u S) * 7 * Observed restraints matched to the expected. Set M = A n B * 8 * Completeness percentage * 9 * Standard deviation from the average over the residues. * 10 * Extra information * 11 * Administrative tag * 12 * Administrative tag ; loop_ _NOE_completeness_class.Type _NOE_completeness_class.Constraint_observed_count _NOE_completeness_class.Constraint_expected_count _NOE_completeness_class.Constraint_matched_count _NOE_completeness_class.Completeness_cumulative_pct _NOE_completeness_class.Std_dev _NOE_completeness_class.Details intraresidue 0 0 0 . . "no intras" sequential 460 674 322 47.8 0.9 . medium-range 243 393 151 38.4 -0.8 . long-range 552 927 393 42.4 -0.1 . intermolecular 0 0 0 . . "no multimer" stop_ loop_ _NOE_completeness_shell.Type _NOE_completeness_shell.Shell_start _NOE_completeness_shell.Shell_end _NOE_completeness_shell.Constraint_expected_count _NOE_completeness_shell.Constraint_matched_count _NOE_completeness_shell.Matched_shell_1 _NOE_completeness_shell.Matched_shell_2 _NOE_completeness_shell.Matched_shell_3 _NOE_completeness_shell.Matched_shell_4 _NOE_completeness_shell.Matched_shell_5 _NOE_completeness_shell.Matched_shell_6 _NOE_completeness_shell.Matched_shell_7 _NOE_completeness_shell.Matched_shell_8 _NOE_completeness_shell.Matched_shell_9 _NOE_completeness_shell.Matched_shell_overflow _NOE_completeness_shell.Completeness_shell_pct _NOE_completeness_shell.Completeness_cumulative_pct edges . . . . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 . . . . shell 0.00 2.00 26 22 0 3 6 8 5 0 0 0 . 0 84.6 84.6 shell 2.00 2.50 220 129 0 6 46 51 23 3 0 0 . 0 58.6 61.4 shell 2.50 3.00 341 215 0 2 30 82 71 23 7 0 . 0 63.0 62.4 shell 3.00 3.50 538 231 0 2 13 53 90 55 18 0 . 0 42.9 53.1 shell 3.50 4.00 869 269 0 0 5 47 97 93 20 7 . 0 31.0 43.4 shell 4.00 4.50 1387 224 0 0 0 7 61 87 56 13 . 0 16.1 32.2 shell 4.50 5.00 1933 119 0 0 0 0 10 61 44 4 . 0 6.2 22.8 shell 5.00 5.50 2344 42 0 0 0 1 1 9 27 4 . 0 1.8 16.3 shell 5.50 6.00 2713 4 0 0 0 0 0 0 4 0 . 0 0.1 12.1 shell 6.00 6.50 3042 0 0 0 0 0 0 0 0 0 . 0 0.0 9.4 shell 6.50 7.00 3285 0 0 0 0 0 0 0 0 0 . 0 0.0 7.5 shell 7.00 7.50 3580 0 0 0 0 0 0 0 0 0 . 0 0.0 6.2 shell 7.50 8.00 3827 0 0 0 0 0 0 0 0 0 . 0 0.0 5.2 shell 8.00 8.50 4155 0 0 0 0 0 0 0 0 0 . 0 0.0 4.4 shell 8.50 9.00 4342 0 0 0 0 0 0 0 0 0 . 0 0.0 3.8 sums . . 32602 1255 0 13 100 249 358 331 176 28 . 0 . . stop_ loop_ _NOE_completeness_comp.Entity_assembly_ID _NOE_completeness_comp.Comp_index_ID _NOE_completeness_comp.Comp_ID _NOE_completeness_comp.Obs_atom_count _NOE_completeness_comp.Constraint_observed_count _NOE_completeness_comp.Constraint_expected_count _NOE_completeness_comp.Constraint_matched_count _NOE_completeness_comp.Completeness_cumulative_pct _NOE_completeness_comp.Std_dev _NOE_completeness_comp.Details 1 10 CYS 4 0 2 0 0.0 -2.2 >sigma 1 11 SER 4 0 7 0 0.0 -2.2 >sigma 1 12 SER 4 0 8 0 0.0 -2.2 >sigma 1 13 ASP 4 0 9 0 0.0 -2.2 >sigma 1 14 SER 4 2 7 2 28.6 -0.7 . 1 15 LEU 7 6 7 3 42.9 0.1 . 1 16 GLN 7 7 9 4 44.4 0.2 . 1 17 LEU 7 24 25 15 60.0 1.0 >sigma 1 18 HIS 6 30 30 18 60.0 1.0 >sigma 1 19 ASN 6 23 37 17 45.9 0.3 . 1 20 VAL 5 23 48 17 35.4 -0.3 . 1 21 PHE 7 55 75 38 50.7 0.5 . 1 22 VAL 5 35 43 23 53.5 0.7 . 1 23 TYR 6 9 34 6 17.6 -1.3 >sigma 1 24 GLY 3 0 18 0 0.0 -2.2 >sigma 1 25 SER 4 0 10 0 0.0 -2.2 >sigma 1 26 PHE 7 33 51 24 47.1 0.3 . 1 27 GLN 7 15 19 9 47.4 0.3 . 1 28 ASP 4 13 15 8 53.3 0.7 . 1 29 PRO 5 21 23 15 65.2 1.3 >sigma 1 30 ASP 4 9 15 8 53.3 0.7 . 1 31 VAL 5 17 26 12 46.2 0.3 . 1 32 ILE 6 33 62 19 30.6 -0.6 . 1 33 ASN 6 25 20 12 60.0 1.0 >sigma 1 34 VAL 5 17 16 12 75.0 1.8 >sigma 1 35 MET 6 28 45 18 40.0 -0.1 . 1 36 LEU 7 16 45 9 20.0 -1.2 >sigma 1 37 ASP 4 9 16 8 50.0 0.5 . 1 38 ARG 7 14 15 11 73.3 1.8 >sigma 1 39 THR 4 19 24 12 50.0 0.5 . 1 40 PRO 5 10 40 8 20.0 -1.2 >sigma 1 41 GLU 5 6 12 4 33.3 -0.4 . 1 42 ILE 6 31 37 22 59.5 1.0 . 1 43 VAL 5 29 38 19 50.0 0.5 . 1 44 SER 4 19 20 11 55.0 0.8 . 1 45 ALA 3 41 34 27 79.4 2.1 >sigma 1 46 THR 4 29 32 20 62.5 1.2 >sigma 1 47 LEU 7 50 71 36 50.7 0.5 . 1 48 PRO 5 19 27 16 59.3 1.0 . 1 49 GLY 3 6 13 5 38.5 -0.1 . 1 50 PHE 7 46 58 35 60.3 1.0 >sigma 1 51 GLN 7 27 37 22 59.5 1.0 . 1 52 ARG 7 14 29 13 44.8 0.2 . 1 53 PHE 7 26 38 17 44.7 0.2 . 1 54 ARG 7 20 21 11 52.4 0.6 . 1 55 LEU 7 0 13 0 0.0 -2.2 >sigma 1 56 LYS 7 0 11 0 0.0 -2.2 >sigma 1 57 GLY 3 0 10 0 0.0 -2.2 >sigma 1 58 ARG 7 5 17 4 23.5 -1.0 . 1 59 LEU 7 32 48 22 45.8 0.3 . 1 60 TYR 6 7 20 5 25.0 -0.9 . 1 61 PRO 5 1 15 1 6.7 -1.9 >sigma 1 62 CYS 4 16 21 8 38.1 -0.2 . 1 63 ILE 6 35 66 28 42.4 0.1 . 1 64 VAL 5 26 48 21 43.8 0.1 . 1 65 PRO 5 16 36 14 38.9 -0.1 . 1 66 SER 4 14 24 12 50.0 0.5 . 1 67 GLU 5 3 8 2 25.0 -0.9 . 1 68 LYS 7 7 10 3 30.0 -0.6 . 1 69 GLY 3 10 13 4 30.8 -0.6 . 1 70 GLU 5 18 20 13 65.0 1.3 >sigma 1 71 VAL 5 34 59 25 42.4 0.1 . 1 72 HIS 6 11 14 8 57.1 0.9 . 1 73 GLY 3 10 14 6 42.9 0.1 . 1 74 LYS 7 20 34 16 47.1 0.3 . 1 75 VAL 5 40 61 29 47.5 0.3 . 1 76 LEU 7 18 58 12 20.7 -1.1 >sigma 1 77 MET 6 18 41 16 39.0 -0.1 . 1 78 GLY 3 20 20 12 60.0 1.0 >sigma 1 79 VAL 5 28 47 16 34.0 -0.4 . 1 80 THR 4 15 19 10 52.6 0.6 . 1 81 SER 4 12 14 8 57.1 0.9 . 1 82 ASP 4 7 15 7 46.7 0.3 . 1 83 GLU 5 18 31 12 38.7 -0.1 . 1 84 LEU 7 33 52 24 46.2 0.3 . 1 85 GLU 5 12 18 10 55.6 0.8 . 1 86 ASN 6 25 24 12 50.0 0.5 . 1 87 LEU 7 28 48 17 35.4 -0.3 . 1 88 ASP 4 16 21 9 42.9 0.1 . 1 89 ALA 3 14 12 7 58.3 0.9 . 1 90 VAL 5 23 32 18 56.3 0.8 . 1 91 GLU 5 13 34 12 35.3 -0.3 . 1 92 GLY 3 6 14 4 28.6 -0.7 . 1 93 ASN 6 2 11 2 18.2 -1.3 >sigma 1 94 GLU 5 10 15 7 46.7 0.3 . 1 95 TYR 6 35 50 24 48.0 0.4 . 1 96 GLU 5 22 28 13 46.4 0.3 . 1 97 ARG 7 23 38 14 36.8 -0.2 . 1 98 VAL 5 30 32 18 56.3 0.8 . 1 99 THR 4 17 19 13 68.4 1.5 >sigma 1 100 VAL 5 33 45 24 53.3 0.7 . 1 101 GLY 3 13 15 9 60.0 1.0 >sigma 1 102 ILE 6 45 71 31 43.7 0.1 . 1 103 VAL 5 29 37 23 62.2 1.1 >sigma 1 104 ARG 7 30 49 22 44.9 0.2 . 1 105 GLU 5 19 20 12 60.0 1.0 >sigma 1 106 ASP 4 13 21 9 42.9 0.1 . 1 107 ASN 6 19 17 11 64.7 1.3 >sigma 1 108 SER 4 7 9 4 44.4 0.2 . 1 109 GLU 5 16 18 12 66.7 1.4 >sigma 1 110 LYS 7 14 21 13 61.9 1.1 >sigma 1 111 MET 6 23 38 21 55.3 0.8 . 1 112 ALA 3 20 16 14 87.5 2.5 >sigma 1 113 VAL 5 25 57 22 38.6 -0.1 . 1 114 LYS 7 28 43 18 41.9 0.0 . 1 115 THR 4 34 41 26 63.4 1.2 >sigma 1 116 TYR 6 29 53 19 35.8 -0.3 . 1 117 MET 6 29 48 20 41.7 0.0 . 1 118 TRP 10 33 58 19 32.8 -0.5 . 1 119 ILE 6 26 27 12 44.4 0.2 . 1 120 ASN 6 14 22 8 36.4 -0.3 . 1 121 LYS 7 12 40 7 17.5 -1.3 >sigma 1 122 ALA 3 6 12 5 41.7 0.0 . 1 123 ASP 4 18 24 14 58.3 0.9 . 1 124 PRO 5 6 8 3 37.5 -0.2 . 1 125 ASP 4 8 13 7 53.8 0.7 . 1 126 MET 6 23 40 18 45.0 0.2 . 1 127 PHE 7 2 10 1 10.0 -1.7 >sigma 1 128 GLY 3 11 9 6 66.7 1.4 >sigma 1 129 GLU 5 5 7 3 42.9 0.1 . 1 130 TRP 10 16 21 10 47.6 0.4 . 1 131 ASN 6 2 11 1 9.1 -1.7 >sigma 1 132 PHE 7 8 17 7 41.2 0.0 . 1 133 GLU 5 10 16 9 56.3 0.8 . 1 134 GLU 5 11 21 8 38.1 -0.2 . 1 135 TRP 10 20 20 11 55.0 0.8 . 1 136 LYS 7 10 17 6 35.3 -0.3 . 1 137 ARG 7 15 25 10 40.0 -0.1 . 1 138 LEU 7 25 29 16 55.2 0.8 . 1 139 HIS 6 11 13 4 30.8 -0.6 . 1 140 LYS 7 12 30 9 30.0 -0.6 . 1 141 LYS 7 8 20 6 30.0 -0.6 . 1 142 LYS 7 7 16 4 25.0 -0.9 . 1 143 PHE 7 12 20 8 40.0 -0.1 . 1 144 ILE 6 26 48 21 43.8 0.1 . 1 145 GLU 5 10 19 6 31.6 -0.5 . 1 146 THR 4 12 18 8 44.4 0.2 . 1 147 PHE 7 24 32 19 59.4 1.0 . 1 148 LYS 7 9 26 8 30.8 -0.6 . 1 149 LYS 7 7 21 3 14.3 -1.5 >sigma 1 150 ILE 6 23 34 16 47.1 0.3 . 1 151 MET 6 4 19 3 15.8 -1.4 >sigma 1 152 GLU 5 4 15 2 13.3 -1.5 >sigma 1 153 CYS 4 11 14 6 42.9 0.1 . 1 154 LYS 7 10 18 7 38.9 -0.1 . 1 155 LYS 7 4 12 4 33.3 -0.4 . 1 156 LYS 7 2 12 2 16.7 -1.3 >sigma 1 157 PRO 5 1 9 1 11.1 -1.6 >sigma 1 158 GLN 7 0 3 0 0.0 -2.2 >sigma stop_ save_
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