NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
440623 2k8v 15964 cing 4-filtered-FRED Wattos check completeness distance


data_2k8v


save_NOE_Completeness
    _NOE_completeness_stats.Sf_category                      NOE_completeness_statistics
    _NOE_completeness_stats.Model_count                      40
    _NOE_completeness_stats.Residue_count                    157
    _NOE_completeness_stats.Total_atom_count                 2450
    _NOE_completeness_stats.Observable_atom_definition       ob_standard
    _NOE_completeness_stats.Observable_atom_count            858
    _NOE_completeness_stats.Use_intra_residue_restraints     no
    _NOE_completeness_stats.Redundancy_threshold_pct         5.0
    _NOE_completeness_stats.Distance_averaging_power         1.00
    _NOE_completeness_stats.Completeness_cutoff              4.00
    _NOE_completeness_stats.Completeness_cumulative_pct      26.3
    _NOE_completeness_stats.Constraint_unexpanded_count      1305
    _NOE_completeness_stats.Constraint_count                 1341
    _NOE_completeness_stats.Constraint_exp_unfiltered_count  2049
    _NOE_completeness_stats.Constraint_exceptional_count     0
    _NOE_completeness_stats.Constraint_nonobservable_count   58
    _NOE_completeness_stats.Constraint_intraresidue_count    201
    _NOE_completeness_stats.Constraint_surplus_count         62
    _NOE_completeness_stats.Constraint_observed_count        1020
    _NOE_completeness_stats.Constraint_expected_count        2016
    _NOE_completeness_stats.Constraint_matched_count         531
    _NOE_completeness_stats.Constraint_unmatched_count       489
    _NOE_completeness_stats.Constraint_exp_nonobs_count      1485
    _NOE_completeness_stats.Details                          
;
A detailed methodology description is available at:
http://nmr.cmbi.ru.nl/~jd/wattos/doc/Wattos/Soup/Constraint/dc_completeness.html

Please note that the contributions in ambiguous restraints are considered
separate 'restraints' for the sets defined below.
The cut off for all statistics except those in the by-shell table is
given below by the above tag: _NOE_completeness_stats.Completeness_cutoff

Description of the tags in this list:
*  1 * Administrative tag
*  2 * Administrative tag
*  3 * Administrative tag
*  4 * Number of models
*  5 * Number of residues
*  6 * Number of atoms
*  7 * Standard set name of observable atom definitions
see: Doreleijers et al., J.Biomol.NMR 14, 123-132 (1999).
*  8 * Observable atom(group)s
*  9 * Include intra residue restraints
*  10 * Surplus threshold for determining redundant restraints
*  11 * Power for averaging the distance over models
*  12 * Up to what distance are NOEs expected
*  13 * Cumulative completeness percentage
*  14 * Number of unexpanded restraints in restraint list.
*  15 * Number of restraints in restraint list.           Set U
*  16 * Expected restraints based on criteria in list.    Set V
Set V differs from set B only if intra residue restraints are analyzed.
*  17 * Exceptional restraints, i.e. with an unknown atom.Set E
*  18 * Not observable NOEs with e.g. hydroxyl Ser HG.    Set O
Even though restraints with these atom types might have been observed they are
excluded from the analysis.
*  19 * Intra-residue restraints if not to be analyzed.   Set I
*  20 * Surplus like double restraints.                   Set S
*  21 * Observed restraints.                              Set A = U - (E u O u I u S)
*  22 * Expected restraints based on criteria as in A.    Set B = V - (I u S)
*  23 * Observed restraints matched to the expected.      Set M = A n B
*  24 * Observed restraints that were not expected.       Set C = A - M
*  25 * Expected restraints that were not observed.       Set D = B - M
*  26 * This tag

Description of the tags in the class table:
*  1 * Class of restraint. Note that 'medium-range' involves (2<=i<=4) contacts.
Possible values are: intraresidue,sequential,medium-range,long-range, and intermolecular.
*  2 * Observed restraints.                              Set A = U - (E u O u I u S)
*  3 * Expected restraints based on criteria as in A.    Set B = V - (I u S)
*  4 * Observed restraints matched to the expected.      Set M = A n B
*  5 * Completeness percentage
*  6 * Standard deviation from the average over the classes.
*  7 * Extra information
*  8 * Administrative tag
*  9 * Administrative tag

Description of the tags in the shell table.
The first row shows the lower limit of the shells requested and
The last row shows the total number of restraints over the shells.
*  1 * Description of the content of the row: edges, shell, or sums.
The value determines the meaning of the values to the nine 'Matched_shell_x' tags among others.
*  2 * Lower limit of shell of expected restraints.
*  3 * Upper limit of shell of expected restraints.
*  4 * Expected restraints based on criteria as in A.    Set B = V - (I u S)
*  5 * Observed restraints matched to the expected.      Set M = A n B
*  6 * Matched restraints with experimental distance in shell 1
*  7 * Matched restraints with experimental distance in shell 2
*  8 * Matched restraints with experimental distance in shell 3
*  9 * Matched restraints with experimental distance in shell 4
*  10 * Matched restraints with experimental distance in shell 5
*  11 * Matched restraints with experimental distance in shell 6
*  12 * Matched restraints with experimental distance in shell 7
*  13 * Matched restraints with experimental distance in shell 8
*  14 * Matched restraints with experimental distance in shell 9
*  15 * Matched restraints overflowing the last shell
*  16 * Completeness percentage for this shell
*  17 * Completeness percentage up to upper limit of this shell
*  18 * Administrative tag
*  19 * Administrative tag

Description of the tags in the residue table:
*  1 * Chain identifier
*  2 * Residue number
*  3 * Residue name
*  4 * Observable atom(group)s for this residue.
*  5 * Observed restraints.                              Set A = U - (E u O u I u S)
*  6 * Expected restraints based on criteria as in A.    Set B = V - (I u S)
*  7 * Observed restraints matched to the expected.      Set M = A n B
*  8 * Completeness percentage
*  9 * Standard deviation from the average over the residues.
*  10 * Extra information
*  11 * Administrative tag
*  12 * Administrative tag
;


    loop_
       _NOE_completeness_class.Type
       _NOE_completeness_class.Constraint_observed_count
       _NOE_completeness_class.Constraint_expected_count
       _NOE_completeness_class.Constraint_matched_count
       _NOE_completeness_class.Completeness_cumulative_pct
       _NOE_completeness_class.Std_dev
       _NOE_completeness_class.Details

       intraresidue     0   0   0    .    . "no intras"   
       sequential     386 714 254 35.6  0.8  .            
       medium-range   290 440 129 29.3  0.2  .            
       long-range     344 862 148 17.2 -1.0  .            
       intermolecular   0   0   0    .    . "no multimer" 
    stop_

    loop_
       _NOE_completeness_shell.Type
       _NOE_completeness_shell.Shell_start
       _NOE_completeness_shell.Shell_end
       _NOE_completeness_shell.Constraint_expected_count
       _NOE_completeness_shell.Constraint_matched_count
       _NOE_completeness_shell.Matched_shell_1
       _NOE_completeness_shell.Matched_shell_2
       _NOE_completeness_shell.Matched_shell_3
       _NOE_completeness_shell.Matched_shell_4
       _NOE_completeness_shell.Matched_shell_5
       _NOE_completeness_shell.Matched_shell_6
       _NOE_completeness_shell.Matched_shell_7
       _NOE_completeness_shell.Matched_shell_8
       _NOE_completeness_shell.Matched_shell_9
       _NOE_completeness_shell.Matched_shell_overflow
       _NOE_completeness_shell.Completeness_shell_pct
       _NOE_completeness_shell.Completeness_cumulative_pct

       edges    .    .     .    . 2.00 2.50 3.00 3.50 4.00 4.50 5.00 5.50 .   .    .    . 
       shell 0.00 2.00    23    8    0    0    0    3    0    1    0    0 .   4 34.8 34.8 
       shell 2.00 2.50   159   72    0    2    0   18    0   33    0    0 .  19 45.3 44.0 
       shell 2.50 3.00   328  109    0    0    0   15    0   62    0    0 .  32 33.2 37.1 
       shell 3.00 3.50   585  172    0    0    0    8    0   79    0    0 .  85 29.4 33.0 
       shell 3.50 4.00   921  170    0    0    0    6    0   57    0    0 . 107 18.5 26.3 
       shell 4.00 4.50  1379  159    0    0    0    0    0   48    0    0 . 111 11.5 20.3 
       shell 4.50 5.00  1913  131    0    0    0    0    0   17    0    0 . 114  6.8 15.5 
       shell 5.00 5.50  2349  104    0    1    0    0    0    0    0    0 . 103  4.4 12.1 
       shell 5.50 6.00  2855   72    0    1    0    0    0    2    0    0 .  69  2.5  9.5 
       shell 6.00 6.50  3109   13    0    0    0    0    0    0    0    0 .  13  0.4  7.4 
       shell 6.50 7.00  3452    2    0    0    0    0    0    0    0    0 .   2  0.1  5.9 
       shell 7.00 7.50  3814    0    0    0    0    0    0    0    0    0 .   0  0.0  4.8 
       shell 7.50 8.00  4162    0    0    0    0    0    0    0    0    0 .   0  0.0  4.0 
       shell 8.00 8.50  4549    0    0    0    0    0    0    0    0    0 .   0  0.0  3.4 
       shell 8.50 9.00  4866    0    0    0    0    0    0    0    0    0 .   0  0.0  2.9 
       sums     .    . 34464 1012    0    4    0   50    0  299    0    0 . 659    .    . 
    stop_

    loop_
       _NOE_completeness_comp.Entity_assembly_ID
       _NOE_completeness_comp.Comp_index_ID
       _NOE_completeness_comp.Comp_ID
       _NOE_completeness_comp.Obs_atom_count
       _NOE_completeness_comp.Constraint_observed_count
       _NOE_completeness_comp.Constraint_expected_count
       _NOE_completeness_comp.Constraint_matched_count
       _NOE_completeness_comp.Completeness_cumulative_pct
       _NOE_completeness_comp.Std_dev
       _NOE_completeness_comp.Details

       1   1 MET  6  0  4  0  0.0 -1.6 >sigma 
       1   2 HIS  6  0  8  0  0.0 -1.6 >sigma 
       1   3 HIS  6  0  8  0  0.0 -1.6 >sigma 
       1   4 HIS  6  0  7  0  0.0 -1.6 >sigma 
       1   5 HIS  6  0  7  0  0.0 -1.6 >sigma 
       1   6 HIS  6  0  7  0  0.0 -1.6 >sigma 
       1   7 HIS  6  0  7  0  0.0 -1.6 >sigma 
       1   8 MET  6  0  9  0  0.0 -1.6 >sigma 
       1   9 SER  4  1  9  0  0.0 -1.6 >sigma 
       1  10 ASP  4  1  8  0  0.0 -1.6 >sigma 
       1  11 GLY  3  0  7  0  0.0 -1.6 >sigma 
       1  12 HIS  6  0  7  0  0.0 -1.6 >sigma 
       1  13 ASN  6  0  8  0  0.0 -1.6 >sigma 
       1  14 GLY  3  0  7  0  0.0 -1.6 >sigma 
       1  15 LEU  7 13 13  5 38.5  0.7 .      
       1  16 GLY  3 13 17  6 35.3  0.5 .      
       1  17 LYS  7  3  6  2 33.3  0.4 .      
       1  18 GLY  3  7  7  3 42.9  0.9 .      
       1  19 PHE  7 11 26  6 23.1 -0.2 .      
       1  20 GLY  3 14 20  8 40.0  0.8 .      
       1  21 ASP  4  6 14  4 28.6  0.1 .      
       1  22 HIS  6  9 15  4 26.7 -0.0 .      
       1  23 ILE  6 33 52 14 26.9  0.0 .      
       1  24 HIS  6  3 41  3  7.3 -1.1 >sigma 
       1  25 TRP 10 25 81 11 13.6 -0.8 .      
       1  26 ARG  7 12 26  4 15.4 -0.7 .      
       1  27 THR  4 11 18  5 27.8  0.1 .      
       1  28 LEU  7  6 27  5 18.5 -0.5 .      
       1  29 GLU  5  4 15  3 20.0 -0.4 .      
       1  30 ASP  4 14 18  9 50.0  1.4 >sigma 
       1  31 GLY  3 17 20 13 65.0  2.2 >sigma 
       1  32 LYS  7 11 23  5 21.7 -0.3 .      
       1  33 LYS  7 10 17  7 41.2  0.9 .      
       1  34 GLU  5 11 26  7 26.9  0.0 .      
       1  35 ALA  3 22 35 18 51.4  1.5 >sigma 
       1  36 ALA  3  9 16  4 25.0 -0.1 .      
       1  37 ALA  3  6 15  5 33.3  0.4 .      
       1  38 SER  4 10 17  9 52.9  1.5 >sigma 
       1  39 GLY  3 10 13  5 38.5  0.7 .      
       1  40 LEU  7 30 46 18 39.1  0.7 .      
       1  41 PRO  5  8 49  4  8.2 -1.1 >sigma 
       1  42 LEU  7 23 55 10 18.2 -0.5 .      
       1  43 MET  6 11 36  5 13.9 -0.7 .      
       1  44 VAL  5 16 46 10 21.7 -0.3 .      
       1  45 ILE  6 31 60 19 31.7  0.3 .      
       1  46 ILE  6 22 70 10 14.3 -0.7 .      
       1  47 HIS  6  5 22  2  9.1 -1.0 >sigma 
       1  48 LYS  7 12 45  4  8.9 -1.0 >sigma 
       1  49 SER  4  5 10  2 20.0 -0.4 .      
       1  50 TRP 10  3  6  1 16.7 -0.6 .      
       1  51 CYS  4  1  9  0  0.0 -1.6 >sigma 
       1  52 GLY  3 11 19  6 31.6  0.3 .      
       1  53 ALA  3 10 28  6 21.4 -0.3 .      
       1  54 CYS  4  8 18  6 33.3  0.4 .      
       1  55 LYS  7 19 20 10 50.0  1.4 >sigma 
       1  56 ALA  3 20 24 11 45.8  1.1 >sigma 
       1  57 LEU  7 10 46  4  8.7 -1.1 >sigma 
       1  58 LYS  7 10 21  5 23.8 -0.2 .      
       1  59 PRO  5  9 17  3 17.6 -0.5 .      
       1  60 LYS  7 12 44  6 13.6 -0.8 .      
       1  61 PHE  7 27 79 10 12.7 -0.8 .      
       1  62 ALA  3 28 16 10 62.5  2.1 >sigma 
       1  63 GLU  5 10 14  4 28.6  0.1 .      
       1  64 SER  4 20 35 13 37.1  0.6 .      
       1  65 THR  4 16 11  4 36.4  0.6 .      
       1  66 GLU  5 14 17  8 47.1  1.2 >sigma 
       1  67 ILE  6 43 69 29 42.0  0.9 .      
       1  68 SER  4 21 24 13 54.2  1.6 >sigma 
       1  69 GLU  5 11 18  8 44.4  1.0 >sigma 
       1  70 LEU  7 26 40 18 45.0  1.1 >sigma 
       1  71 SER  4 17 20  8 40.0  0.8 .      
       1  72 HIS  6 12 11  8 72.7  2.7 >sigma 
       1  73 ASN  6 19 29  8 27.6  0.1 .      
       1  74 PHE  7 24 48 10 20.8 -0.3 .      
       1  75 VAL  5 28 49 19 38.8  0.7 .      
       1  76 MET  6  5 37  1  2.7 -1.4 >sigma 
       1  77 VAL  5 20 47  7 14.9 -0.7 .      
       1  78 ASN  6 20 34  8 23.5 -0.2 .      
       1  79 LEU  7 23 39  8 20.5 -0.4 .      
       1  80 GLU  5  7 19  3 15.8 -0.6 .      
       1  81 ASP  4  6 20  2 10.0 -1.0 .      
       1  82 GLU  5  3  9  3 33.3  0.4 .      
       1  83 GLU  5 10 16  8 50.0  1.4 >sigma 
       1  84 GLU  5  5 10  3 30.0  0.2 .      
       1  85 PRO  5 11 22  4 18.2 -0.5 .      
       1  86 LYS  7  3  8  3 37.5  0.6 .      
       1  87 ASP  4 13 12  4 33.3  0.4 .      
       1  88 GLU  5  8 12  4 33.3  0.4 .      
       1  89 ASP  4 12 18  5 27.8  0.1 .      
       1  90 PHE  7 19 38 11 28.9  0.1 .      
       1  91 SER  4 17 18  6 33.3  0.4 .      
       1  92 PRO  5  9 26  5 19.2 -0.4 .      
       1  93 ASP  4  5 11  2 18.2 -0.5 .      
       1  94 GLY  3 12  9  5 55.6  1.7 >sigma 
       1  95 GLY  3  8  8  5 62.5  2.1 >sigma 
       1  96 TYR  6 14 45  4  8.9 -1.0 >sigma 
       1  97 ILE  6 16 26  3 11.5 -0.9 .      
       1  98 PRO  5  7 54  1  1.9 -1.5 >sigma 
       1  99 ARG  7  6 54  2  3.7 -1.3 >sigma 
       1 100 ILE  6 24 44 15 34.1  0.4 .      
       1 101 LEU  7 35 53 16 30.2  0.2 .      
       1 102 PHE  7 10 38  7 18.4 -0.5 .      
       1 103 LEU  7 29 66 19 28.8  0.1 .      
       1 104 ASP  4 14 20  8 40.0  0.8 .      
       1 105 PRO  5 19 27  8 29.6  0.2 .      
       1 106 SER  4  7 12  4 33.3  0.4 .      
       1 107 GLY  3 11 19 10 52.6  1.5 >sigma 
       1 108 LYS  7 10 17  7 41.2  0.9 .      
       1 109 VAL  5 34 47 21 44.7  1.1 >sigma 
       1 110 HIS  6  7 14  5 35.7  0.5 .      
       1 111 PRO  5  8 12  4 33.3  0.4 .      
       1 112 GLU  5  6 13  3 23.1 -0.2 .      
       1 113 ILE  6 16 44 11 25.0 -0.1 .      
       1 114 ILE  6 24 49 14 28.6  0.1 .      
       1 115 ASN  6 21 41 15 36.6  0.6 .      
       1 116 GLU  5 17 20 14 70.0  2.5 >sigma 
       1 117 ASN  6 12 15  8 53.3  1.6 >sigma 
       1 118 GLY  3 19 20 12 60.0  2.0 >sigma 
       1 119 ASN  6 16 16  8 50.0  1.4 >sigma 
       1 120 PRO  5  8 12  4 33.3  0.4 .      
       1 121 SER  4 12 11  4 36.4  0.6 .      
       1 122 TYR  6 33 36 17 47.2  1.2 >sigma 
       1 123 LYS  7 24 55 13 23.6 -0.2 .      
       1 124 TYR  6 12 55  5  9.1 -1.0 >sigma 
       1 125 PHE  7 35 46 18 39.1  0.7 .      
       1 126 TYR  6 20 48 13 27.1  0.0 .      
       1 127 VAL  5 23 26 10 38.5  0.7 .      
       1 128 SER  4 13 22  5 22.7 -0.2 .      
       1 129 ALA  3 13 32  6 18.8 -0.5 .      
       1 130 GLU  5  9 17  7 41.2  0.9 .      
       1 131 GLN  7 13 51 11 21.6 -0.3 .      
       1 132 VAL  5 36 41 13 31.7  0.3 .      
       1 133 VAL  5 19 46 10 21.7 -0.3 .      
       1 134 GLN  7 21 34 11 32.4  0.3 .      
       1 135 GLY  3 11 17  7 41.2  0.9 .      
       1 136 MET  6 24 40 10 25.0 -0.1 .      
       1 137 LYS  7 22 35  9 25.7 -0.1 .      
       1 138 GLU  5 22 19 10 52.6  1.5 >sigma 
       1 139 ALA  3 21 37 14 37.8  0.7 .      
       1 140 GLN  7 22 34 10 29.4  0.2 .      
       1 141 GLU  5  8 15  5 33.3  0.4 .      
       1 142 ARG  7 16 27  8 29.6  0.2 .      
       1 143 LEU  7 30 56 14 25.0 -0.1 .      
       1 144 THR  4 14 23  8 34.8  0.5 .      
       1 145 GLY  3  7  8  3 37.5  0.6 .      
       1 146 ASP  4 16 15  6 40.0  0.8 .      
       1 147 ALA  3 10 12  4 33.3  0.4 .      
       1 148 PHE  7 18 38  7 18.4 -0.5 .      
       1 149 ARG  7 14 20  4 20.0 -0.4 .      
       1 150 LYS  7  7  8  2 25.0 -0.1 .      
       1 151 LYS  7  5 10  1 10.0 -1.0 .      
       1 152 HIS  6  0  9  0  0.0 -1.6 >sigma 
       1 153 LEU  7  0 11  0  0.0 -1.6 >sigma 
       1 154 GLU  5  0 12  0  0.0 -1.6 >sigma 
       1 155 ASP  4  0  9  0  0.0 -1.6 >sigma 
       1 156 GLU  5  0  9  0  0.0 -1.6 >sigma 
       1 157 LEU  7  0  5  0  0.0 -1.6 >sigma 
    stop_

save_



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Contact the webmaster for help, if required. Saturday, February 22, 2020 8:57:09 PM GMT (wattos1)