NMR Restraints Grid

Result table
 (Save to zip file containing files for each block)

image mrblock_id pdb_id bmrb_id cing stage program type subtype subsubtype
370138 1bmr 4853 cing 4-filtered-FRED Wattos check stereo assignment distance


data_1bmr


save_assign_stereo
    _Stereo_assign_list.Sf_category          stereo_assignments
    _Stereo_assign_list.Triplet_count        16
    _Stereo_assign_list.Swap_count           1
    _Stereo_assign_list.Swap_percentage      6.3
    _Stereo_assign_list.Deassign_count       0
    _Stereo_assign_list.Deassign_percentage  0.0
    _Stereo_assign_list.Model_count          25
    _Stereo_assign_list.Total_e_low_states   0.140
    _Stereo_assign_list.Total_e_high_states  3.714
    _Stereo_assign_list.Crit_abs_e_diff      0.100
    _Stereo_assign_list.Crit_rel_e_diff      0.000
    _Stereo_assign_list.Crit_mdls_favor_pct  75.0
    _Stereo_assign_list.Crit_sing_mdl_viol   1.000
    _Stereo_assign_list.Crit_multi_mdl_viol  0.500
    _Stereo_assign_list.Crit_multi_mdl_pct   50.0
    _Stereo_assign_list.Details              
;
Description of the tags in this list:
*  1 * NMR-STAR 3 administrative tag
*  2 * NMR-STAR 3 administrative tag
*  3 * NMR-STAR 3 administrative tag
*  4 * Number of triplets (atom-group pair and pseudo)
*  5 * Number of triplets that were swapped
*  6 * Percentage of triplets that were swapped
*  7 * Number of deassigned triplets
*  8 * Percentage of deassigned triplets
*  9 * Number of models in ensemble
* 10 * Energy of the states with the lower energies summed for all triplets (Ang.**2)
* 11 * Energy of the states with the higher energies summed for all triplets (Ang.**2)
* 12 * Item 9-8
* 13 * Criterium for swapping assignment on the absolute energy difference (Ang.**2)
* 14 * Criterium for swapping assignment on the relative energy difference (Ang.**2)
* 15 * Criterium for swapping assignment on the percentage of models favoring a swap
* 16 * Criterium for deassignment on a single model violation (Ang.)
* 17 * Criterium for deassignment on a multiple model violation (Ang.)
* 18 * Criterium for deassignment on a percentage of models
* 19 * this tag

Description of the tags in the table below:
*  1 * Chain identifier (can be absent if none defined)
*  2 * Residue number
*  3 * Residue name
*  4 * Name of pseudoatom representing the triplet
*  5 * Ordinal number of assignment (1 is assigned first)
*  6 * 'yes' if assignment state is swapped with respect to restraint file
*  7 * Percentage of models in which the assignment with the lowest
        overall energy is favoured
*  8 * Percentage of difference between lowest and highest overall energy
        with respect to the highest overall energy
*  9 * Difference between lowest and highest overall energy
* 10 * Energy of the highest overall energy state (Ang.**2)
* 11 * Energy of the lowest overall energy state (Ang.**2)
* 12 * Number of restraints involved with the triplet. The highest ranking
        triplet on this number, is assigned first
* 13 * Number of restraints involved with the triplet that are ambiguous
        besides the ambiguity from this triplet
* 14 * 'yes' if restraints included in this triplet are deassigned
* 15 * Maximum unaveraged violation before deassignment (Ang.)
* 16 * Number of violated restraints above threshold for a single model
        before deassignment (given by Single_mdl_crit_count)
* 17 * Number of violated restraints above threshold for a multiple models
        before deassignment (given by Multi_mdl_crit_count)
* 18 * NMR-STAR 3.0 administrative tag
* 19 * NMR-STAR 3.0 administrative tag
;


    loop_
       _Stereo_assign.Entity_assembly_ID
       _Stereo_assign.Comp_index_ID
       _Stereo_assign.Comp_ID
       _Stereo_assign.Pseudo_Atom_ID
       _Stereo_assign.Num
       _Stereo_assign.Swapped
       _Stereo_assign.Models_favoring_pct
       _Stereo_assign.Energy_difference_pct
       _Stereo_assign.Energy_difference
       _Stereo_assign.Energy_high_state
       _Stereo_assign.Energy_low_state
       _Stereo_assign.Constraint_count
       _Stereo_assign.Constraint_ambi_count
       _Stereo_assign.Deassigned
       _Stereo_assign.Violation_max
       _Stereo_assign.Single_mdl_crit_count
       _Stereo_assign.Multi_mdl_crit_count

       1  1 VAL QG  1 no    4.0 100.0 0.000 0.000 0.000 15 2 no 0.000 0 0 
       1  2 ARG QD  8 no  100.0   0.0 0.000 0.000 0.000  4 2 no 0.000 0 0 
       1  3 ASP QB  2 no  100.0  32.7 0.062 0.190 0.128 12 2 no 0.056 0 0 
       1  5 TYR QB  5 no   32.0   5.2 0.000 0.003 0.003  8 0 no 0.104 0 0 
       1  9 PRO QD  7 no  100.0   0.0 0.000 0.000 0.000  4 0 no 0.076 0 0 
       1 10 GLU QB  6 no   80.0 100.0 0.012 0.012 0.000  7 0 no 0.000 0 0 
       1 11 ASN QD  3 no   12.0  24.1 0.001 0.003 0.002 10 5 no 0.099 0 0 
       1 12 CYS QB  4 no   76.0  99.7 0.091 0.092 0.000  8 0 no 0.051 0 0 
       1 14 TYR QB 13 no  100.0   0.0 0.000 0.000 0.000  2 0 no 0.000 0 0 
       1 26 LEU QB 12 no  100.0   0.0 0.000 0.000 0.000  2 0 no 0.000 0 0 
       1 38 GLY QA 11 no  100.0   0.0 0.000 0.000 0.000  2 0 no 0.000 0 0 
       1 50 ASN QD 14 yes  96.0 100.0 0.127 0.127 0.000  2 2 no 0.021 0 0 
       1 56 VAL QG 15 no  100.0   0.0 0.000 0.000 0.000  1 0 no 0.000 0 0 
       1 57 GLY QA 10 no  100.0  99.9 3.280 3.284 0.004  2 0 no 0.119 0 0 
       1 60 VAL QG 16 no  100.0   0.0 0.000 0.000 0.000  1 1 no 0.000 0 0 
       1 63 GLU QB  9 no  100.0   0.0 0.000 0.002 0.002  4 4 no 0.099 0 0 
    stop_

save_



Please acknowledge these references in publications where the data from this site have been utilized.

Contact the webmaster for help, if required. Thursday, April 25, 2024 3:31:00 AM GMT (wattos1)